Variant report

Variant	rs554529099
Chromosome Location	chr2:179518170-179518171
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834468	chr2:179351116-179533625	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv2757841	chr2:179409072-179608242	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv2759103	chr2:179409072-179608242	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv1813473	chr2:179515899-179540690	Genic enhancers Weak transcription Strong transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv10202	chr2:179516350-179528978	Strong transcription Weak transcription Genic enhancers Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
6	esv1801893	chr2:179516812-179528326	Strong transcription Weak transcription Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
7	esv1810414	chr2:179516812-179528326	Weak transcription Strong transcription Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
8	esv1813898	chr2:179516812-179528326	Weak transcription Strong transcription Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
9	esv1823220	chr2:179516812-179528326	Weak transcription Strong transcription Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
10	esv1844116	chr2:179516812-179528672	Weak transcription Strong transcription Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
11	nsv933207	chr2:179517034-179527907	Weak transcription Strong transcription Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
12	nsv934297	chr2:179517160-179527907	Weak transcription Strong transcription Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
13	esv16126	chr2:179518009-179528400	Weak transcription Strong transcription Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
14	nsv821308	chr2:179518009-179528400	Weak transcription Strong transcription Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179438400-179518200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:179479600-179519400	Weak transcription	Fetal Thymus	thymus
3	chr2:179481400-179520000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr2:179483200-179655400	Weak transcription	Adipose Nuclei	Adipose
5	chr2:179493000-179620800	Weak transcription	HSMM	muscle
6	chr2:179496000-179521600	Weak transcription	Fetal Intestine Large	intestine
7	chr2:179497800-179518400	Weak transcription	Pancreas	Pancrea
8	chr2:179497800-179530400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr2:179498000-179521000	Weak transcription	Right Ventricle	heart
10	chr2:179501000-179541800	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr2:179508200-179519000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr2:179509000-179518200	Strong transcription	HSMMtube	muscle
13	chr2:179511800-179518400	Strong transcription	Left Ventricle	heart
14	chr2:179514400-179528400	Weak transcription	Fetal Heart	heart
15	chr2:179515600-179518400	Weak transcription	Thymus	Thymus
16	chr2:179516000-179518200	Strong transcription	Fetal Muscle Trunk	muscle
17	chr2:179516200-179518200	Genic enhancers	Skeletal Muscle Female	skeletal muscle
18	chr2:179516800-179518600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr2:179516800-179528400	Weak transcription	Primary B cells from cord blood	blood
20	chr2:179517800-179528400	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr2:179518000-179528200	Weak transcription	Fetal Muscle Leg	muscle
22	chr2:179518000-179528200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr2:179518000-179528400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr2:179518000-179529000	Weak transcription	Psoas Muscle	Psoas
25	chr2:179518000-179533400	Weak transcription	Primary T cells from cord blood	blood
26	chr2:179518000-179536000	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr2:179518000-179540200	Weak transcription	Primary B cells from peripheral blood	blood

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