Variant report

Variant	rs554534176
Chromosome Location	chr2:98829775-98829776
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518056	chr2:98586842-99156296	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1004082	chr2:98792256-98967681	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv535833	chr2:98792256-98967681	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv582513	chr2:98829237-98869914	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98827600-98829800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:98827600-98830200	Enhancers	Fetal Stomach	stomach
3	chr2:98828000-98829800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:98828000-98830000	Enhancers	Colon Smooth Muscle	Colon
5	chr2:98828400-98829800	Enhancers	Fetal Brain Male	brain
6	chr2:98828400-98830000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:98828600-98829800	Enhancers	Brain Germinal Matrix	brain
8	chr2:98829000-98835000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr2:98829400-98830000	Enhancers	Esophagus	oesophagus
10	chr2:98829400-98830000	Enhancers	Rectal Smooth Muscle	rectum
11	chr2:98829400-98830200	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr2:98829600-98829800	Active TSS	Stomach Smooth Muscle	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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