Variant report

Variant	rs554545454
Chromosome Location	chr4:1210152-1210153
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:1209933-1210945	GM12892	blood:	n/a	n/a
2	TCF3	chr4:1208859-1210344	GM12878	blood:	n/a	n/a
3	POLR2A	chr4:1209574-1211350	HL-60	blood:	n/a	n/a
4	POLR2A	chr4:1210119-1210227	MCF-7	breast:	n/a	n/a
5	POLR2A	chr4:1209548-1211003	GM12878	blood:	n/a	n/a
6	POLR2A	chr4:1210134-1210294	GM12878	blood:	n/a	n/a
7	POLR2A	chr4:1209568-1210379	GM12878	blood:	n/a	n/a
8	POLR2A	chr4:1209534-1210709	K562	blood:	n/a	n/a
9	RUNX3	chr4:1208852-1210386	GM12878	blood:	n/a	n/a
10	POLR2A	chr4:1208736-1211035	GM12892	blood:	n/a	n/a
11	MTA3	chr4:1208835-1211238	GM12878	blood:	n/a	n/a
12	POLR2A	chr4:1210138-1210230	MCF-7	breast:	n/a	n/a
13	ELF1	chr4:1208687-1211263	GM12878	blood:	n/a	n/a
14	POLR2A	chr4:1210096-1210372	K562	blood:	n/a	n/a
15	POLR2A	chr4:1210061-1210187	GM12878	blood:	n/a	n/a
16	POLR2A	chr4:1209599-1210782	HepG2	liver:	n/a	n/a
17	STAT5A	chr4:1208133-1210564	GM12878	blood:	n/a	chr4:1208594-1208606 chr4:1208965-1208977 chr4:1208374-1208386 chr4:1210396-1210420
18	POLR2A	chr4:1208835-1211179	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr4:1209494..1211546-chr4:1218177..1220594,3	MCF-7	breast:
2	chr4:1203383..1207466-chr4:1208474..1210757,3	K562	blood:
3	chr2:86422281..86424225-chr4:1209194..1210696,2	K562	blood:

Variant related genes	Relation type
CTBP1	TF binding region
ENSG00000132305	Chromatin interaction
ENSG00000273080	Chromatin interaction
ENSG00000159692	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv822425	chr4:540105-1413799	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
2	nsv530490	chr4:614355-1399150	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
3	nsv1009619	chr4:901897-1215657	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	esv3339080	chr4:970630-1546223	Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
5	nsv829835	chr4:1097586-1304239	Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
6	nsv878328	chr4:1141573-1990425	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
7	nsv878329	chr4:1147407-1254930	Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
8	nsv878330	chr4:1147407-1523930	Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
9	nsv593276	chr4:1159680-1227469	Flanking Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
10	nsv461151	chr4:1159680-1236840	Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
11	nsv593277	chr4:1159680-1236840	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
12	nsv878331	chr4:1159680-1254930	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
13	nsv461152	chr4:1159680-1415698	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
14	nsv593278	chr4:1159680-1415698	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
15	nsv461153	chr4:1174861-1254930	Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
16	nsv593279	chr4:1174861-1254930	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
17	nsv461154	chr4:1179213-1254930	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
18	nsv593280	chr4:1179213-1254930	Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
19	nsv878332	chr4:1179213-1254930	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
20	nsv997971	chr4:1191256-1518521	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
21	nsv878333	chr4:1193832-1254930	Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
22	nsv461155	chr4:1203265-1352685	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
23	nsv593281	chr4:1203265-1352685	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
24	nsv966246	chr4:1205017-1210824	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
25	esv3436317	chr4:1208602-1211100	Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
26	esv3355881	chr4:1209202-1211700	Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
27	nsv822430	chr4:1209835-1210293	Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:1195200-1214600	Weak transcription	A549	lung
2	chr4:1198000-1211200	Genic enhancers	Fetal Stomach	stomach
3	chr4:1201600-1211600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:1202600-1210200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr4:1202800-1210200	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr4:1202800-1218000	Weak transcription	Fetal Brain Male	brain
7	chr4:1203000-1210200	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr4:1203200-1217800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr4:1203400-1210200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:1203400-1213000	Weak transcription	Fetal Kidney	kidney
11	chr4:1203800-1223000	Strong transcription	Osteobl	bone
12	chr4:1204000-1211600	Genic enhancers	Esophagus	oesophagus
13	chr4:1204000-1218000	Weak transcription	K562	blood
14	chr4:1204200-1212600	Genic enhancers	Fetal Muscle Leg	muscle
15	chr4:1204400-1210400	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr4:1204400-1210800	Strong transcription	Fetal Intestine Large	intestine
17	chr4:1204400-1211600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
18	chr4:1204400-1211600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr4:1204400-1211600	Genic enhancers	Fetal Muscle Trunk	muscle
20	chr4:1204400-1212000	Strong transcription	NHEK	skin
21	chr4:1204400-1227200	Strong transcription	Fetal Intestine Small	intestine
22	chr4:1204400-1235800	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr4:1204600-1210200	Weak transcription	Fetal Heart	heart
24	chr4:1204600-1220400	Strong transcription	Liver	Liver
25	chr4:1204600-1236200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr4:1204800-1211000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr4:1204800-1212000	Strong transcription	H1 Cell Line	embryonic stem cell
28	chr4:1204800-1213800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr4:1204800-1226400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr4:1204800-1237000	Weak transcription	Psoas Muscle	Psoas
31	chr4:1205000-1210200	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr4:1205000-1210600	Weak transcription	Small Intestine	intestine
33	chr4:1205000-1211000	Weak transcription	Right Atrium	heart
34	chr4:1205000-1213400	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr4:1205000-1226200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr4:1205200-1210400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr4:1205200-1211800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr4:1205200-1218000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr4:1205400-1226800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr4:1205800-1210400	Strong transcription	H9 Cell Line	embryonic stem cell
41	chr4:1205800-1211400	Strong transcription	Placenta Amnion	Placenta Amnion
42	chr4:1205800-1211600	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr4:1205800-1228200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr4:1206000-1210200	Strong transcription	Left Ventricle	heart
45	chr4:1206000-1211600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr4:1206000-1212000	Strong transcription	Colon Smooth Muscle	Colon
47	chr4:1206000-1226800	Strong transcription	Fetal Brain Female	brain
48	chr4:1206200-1210200	Strong transcription	Brain Angular Gyrus	brain
49	chr4:1206200-1211400	Strong transcription	Aorta	Aorta
50	chr4:1206400-1210400	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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