Variant report

Variant	rs554567779
Chromosome Location	chr13:95759460-95759461
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95753710..95755346-chr13:95758126..95760689,2	MCF-7	breast:
2	chr13:95757108..95759848-chr13:95767830..95770575,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832688	chr13:95633193-95780198	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv533659	chr13:95757713-96042149	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv832689	chr13:95759073-95921308	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95723800-95760000	Weak transcription	Colon Smooth Muscle	Colon
2	chr13:95724000-95760600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr13:95727000-95791600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:95727000-95812000	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr13:95727600-95761000	Weak transcription	K562	blood
6	chr13:95727800-95767800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr13:95728400-95778800	Weak transcription	Ovary	ovary
8	chr13:95728600-95776000	Weak transcription	Gastric	stomach
9	chr13:95731200-95791600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr13:95740600-95772200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr13:95740800-95791200	Weak transcription	NHLF	lung
12	chr13:95741400-95763400	Weak transcription	Left Ventricle	heart
13	chr13:95741600-95772600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr13:95744200-95765200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr13:95749600-95761000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr13:95750400-95812400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr13:95750400-95815400	Weak transcription	Fetal Intestine Large	intestine
18	chr13:95751000-95793400	Weak transcription	Fetal Kidney	kidney
19	chr13:95751400-95777600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr13:95751600-95795600	Weak transcription	Small Intestine	intestine
21	chr13:95752000-95789000	Weak transcription	Aorta	Aorta
22	chr13:95752200-95760600	Weak transcription	GM12878-XiMat	blood
23	chr13:95752200-95823200	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr13:95752200-95844200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr13:95753400-95775400	Weak transcription	HSMMtube	muscle
26	chr13:95753600-95761000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr13:95753600-95767400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr13:95753600-95772600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr13:95754000-95766800	Weak transcription	Osteobl	bone
30	chr13:95754000-95777200	Weak transcription	NHDF-Ad	bronchial
31	chr13:95754000-95794800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr13:95754400-95768000	Weak transcription	NH-A	brain
33	chr13:95754400-95782600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr13:95754600-95764000	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr13:95755000-95774200	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr13:95755400-95776400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr13:95756400-95759800	Weak transcription	Psoas Muscle	Psoas
38	chr13:95756400-95828200	Weak transcription	HSMM	muscle
39	chr13:95756600-95766400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr13:95757600-95772800	Weak transcription	Lung	lung
41	chr13:95757600-95814400	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr13:95757800-95760600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr13:95758000-95761600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr13:95758000-95764800	Weak transcription	Stomach Smooth Muscle	stomach
45	chr13:95758000-95766600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr13:95758000-95791600	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr13:95758200-95760800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr13:95758200-95761000	Weak transcription	Fetal Intestine Small	intestine
49	chr13:95758200-95769200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr13:95758200-95774000	Weak transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links