Variant report

Variant	rs554575995
Chromosome Location	chr2:171602947-171602948
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:171602544..171604977-chr2:171607272..171609245,2	K562	blood:
2	chr2:171571145..171574823-chr2:171602056..171606730,4	K562	blood:
3	chr2:171598979..171601021-chr2:171601414..171603949,2	K562	blood:
4	chr2:171081877..171083554-chr2:171602935..171605209,2	K562	blood:
5	chr2:171598820..171602992-chr2:171626434..171628904,5	K562	blood:
6	chr2:171594157..171598805-chr2:171599016..171605066,9	K562	blood:
7	chr2:171595899..171597682-chr2:171601375..171604248,2	MCF-7	breast:
8	chr2:171598608..171603078-chr2:171626081..171629316,7	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000239467	Chromatin interaction
ENSG00000128692	Chromatin interaction
ENSG00000234350	Chromatin interaction
ENSG00000204335	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963746	chr2:171602620-171609432	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171574000-171620800	Weak transcription	Pancreas	Pancrea
2	chr2:171597600-171603800	Weak transcription	HMEC	breast
3	chr2:171597800-171604000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:171598000-171603800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr2:171600800-171604000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr2:171601000-171603800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr2:171601600-171604200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:171601600-171606400	Weak transcription	Gastric	stomach
9	chr2:171601800-171604200	Weak transcription	Stomach Mucosa	stomach
10	chr2:171602000-171604000	Weak transcription	K562	blood
11	chr2:171602600-171603800	Weak transcription	Monocytes-CD14+_RO01746	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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