Variant report

Variant	rs554577161
Chromosome Location	chr9:16310626-16310627
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:16309575..16311117-chr9:16313387..16315896,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv892644	chr9:16275107-16389006	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv892645	chr9:16292669-16368732	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv613668	chr9:16310620-16377360	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16304200-16310800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr9:16307000-16311000	Weak transcription	Pancreas	Pancrea
3	chr9:16307600-16311400	Weak transcription	Stomach Mucosa	stomach
4	chr9:16308600-16311000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:16308600-16313400	Enhancers	Ovary	ovary
6	chr9:16308800-16310800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr9:16308800-16310800	Bivalent Enhancer	Fetal Muscle Leg	muscle
8	chr9:16308800-16318200	Enhancers	Fetal Lung	lung
9	chr9:16309000-16310800	Enhancers	Brain Germinal Matrix	brain
10	chr9:16309000-16311000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr9:16309000-16311000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
12	chr9:16309000-16312400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:16309200-16310800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr9:16309200-16311000	Enhancers	Right Atrium	heart
15	chr9:16309200-16311400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr9:16309400-16311200	Enhancers	Adipose Nuclei	Adipose
17	chr9:16309400-16311200	Enhancers	Fetal Intestine Large	intestine
18	chr9:16309400-16311200	Enhancers	Rectal Smooth Muscle	rectum
19	chr9:16309600-16310800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr9:16309600-16311000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:16309600-16311000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr9:16309600-16311200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr9:16309600-16311200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr9:16309600-16311200	Bivalent Enhancer	Fetal Stomach	stomach
25	chr9:16309600-16311200	Enhancers	Placenta Amnion	Placenta Amnion
26	chr9:16309800-16310800	Enhancers	Fetal Intestine Small	intestine
27	chr9:16309800-16311200	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr9:16310000-16310800	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr9:16310000-16310800	Bivalent Enhancer	Fetal Brain Male	brain
30	chr9:16310000-16311200	Enhancers	Lung	lung
31	chr9:16310000-16311200	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr9:16310000-16311400	Enhancers	Fetal Kidney	kidney
33	chr9:16310000-16311800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr9:16310200-16311000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr9:16310200-16311000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr9:16310200-16311000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
37	chr9:16310200-16311200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr9:16310200-16311200	Bivalent Enhancer	Fetal Brain Female	brain
39	chr9:16310400-16310800	Bivalent Enhancer	Left Ventricle	heart
40	chr9:16310400-16311200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
41	chr9:16310400-16311200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
42	chr9:16310400-16311200	Bivalent Enhancer	Placenta	Placenta
43	chr9:16310400-16311200	Flanking Active TSS	Stomach Smooth Muscle	stomach
44	chr9:16310600-16310800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr9:16310600-16311000	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr9:16310600-16311200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr9:16310600-16314400	Weak transcription	NHLF	lung
48	chr9:16310600-16317000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr9:16310600-16317400	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links