Variant report

Variant	rs554611619
Chromosome Location	chr3:89233901-89233902
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834760	chr3:89085529-89299398	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv997874	chr3:89188275-89279573	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1008916	chr3:89206065-89241915	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv979775	chr3:89232947-89234326	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89227200-89235800	Weak transcription	Fetal Brain Female	brain
2	chr3:89229400-89234800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:89230000-89234000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:89231400-89234600	Weak transcription	Fetal Brain Male	brain
5	chr3:89232400-89234000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:89232600-89235000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr3:89233000-89235000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr3:89233200-89235000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr3:89233200-89235000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr3:89233200-89235200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr3:89233400-89234200	Enhancers	Brain Substantia Nigra	brain
12	chr3:89233400-89234200	Enhancers	Fetal Lung	lung
13	chr3:89233400-89234400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:89233400-89235000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:89233400-89235200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr3:89233400-89235200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
17	chr3:89233600-89234000	Enhancers	Brain Germinal Matrix	brain
18	chr3:89233600-89234800	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr3:89233800-89234000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr3:89233800-89234200	Enhancers	Brain Hippocampus Middle	brain
21	chr3:89233800-89234200	Enhancers	Stomach Smooth Muscle	stomach
22	chr3:89233800-89234800	Enhancers	H1 Cell Line	embryonic stem cell
23	chr3:89233800-89236200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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