Variant report

Variant	rs554615659
Chromosome Location	chr14:103938624-103938625
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:103910725..103912536-chr14:103938004..103940209,2	MCF-7	breast:
2	chr14:103928725..103932074-chr14:103935042..103939348,3	MCF-7	breast:
3	chr14:103936726..103938718-chr14:103938983..103940758,2	MCF-7	breast:
4	chr14:103936184..103939153-chr14:103940230..103942557,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000075413	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049747	chr14:103126148-103955984	Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	113 gene(s)	inside rSNPs	diseases
2	nsv534254	chr14:103470073-104023906	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
3	esv3332028	chr14:103581471-104328811	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
4	nsv832883	chr14:103927687-104120953	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
5	nsv525874	chr14:103937372-103950368	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1829466	chr14:103937582-103954794	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:103879000-103941400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:103912200-103942200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr14:103918600-103941400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr14:103922400-103939200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr14:103922400-103955000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:103922800-103940800	Weak transcription	Fetal Heart	heart
7	chr14:103923000-103941600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr14:103923000-103949400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr14:103923200-103976800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr14:103923600-103967000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr14:103923800-103941400	Weak transcription	Small Intestine	intestine
12	chr14:103924000-103957400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr14:103925600-103958400	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr14:103926200-103950400	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr14:103926800-103963400	Strong transcription	Fetal Intestine Large	intestine
16	chr14:103927200-103942400	Weak transcription	Fetal Brain Male	brain
17	chr14:103927400-103944200	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr14:103927400-103944800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr14:103927600-103944000	Strong transcription	Fetal Thymus	thymus
20	chr14:103927600-103946600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr14:103927800-103939600	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr14:103927800-103944400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr14:103927800-103945400	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr14:103927800-103946000	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr14:103927800-103946400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr14:103927800-103946600	Strong transcription	Duodenum Mucosa	Duodenum
27	chr14:103927800-103949200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr14:103927800-103951000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
29	chr14:103927800-103951600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr14:103927800-103979800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr14:103928000-103946600	Strong transcription	Primary T cells from cord blood	blood
32	chr14:103928000-103946800	Strong transcription	Fetal Intestine Small	intestine
33	chr14:103928000-103947600	Strong transcription	Fetal Stomach	stomach
34	chr14:103928400-103945400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr14:103928400-103947600	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr14:103928600-103950800	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr14:103929800-103946400	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr14:103930000-103946400	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr14:103930600-103940400	Weak transcription	Esophagus	oesophagus
40	chr14:103930600-103951800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr14:103931600-103943600	Strong transcription	GM12878-XiMat	blood
42	chr14:103931600-103944200	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr14:103931600-103946400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr14:103931600-103949400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr14:103931600-103955000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr14:103932000-103953800	Strong transcription	Fetal Muscle Leg	muscle
47	chr14:103934000-103943400	Strong transcription	NHLF	lung
48	chr14:103934000-103944000	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr14:103934400-103943400	Strong transcription	Right Ventricle	heart
50	chr14:103934400-103944000	Strong transcription	HSMMtube	muscle

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