Variant report

Variant	rs554627946
Chromosome Location	chr10:119001209-119001210
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:119001180..119002700-chr3:73158543..73161387,2	MCF-7	breast:
2	chr10:119001180..119002700-chr17:41466350..41468296,2	K562	blood:
3	chr10:119001200..119002700-chr11:62609117..62610696,2	K562	blood:
4	chr10:119001180..119002700-chr3:73158602..73160591,2	K562	blood:
5	chr10:118999700..119002680-chr17:41380895..41383406,2	K562	blood:
6	chr10:119001180..119001700-chr11:62609120..62609716,2	Hela-S3	cervix:
7	chr10:119001180..119002700-chr17:41464210..41468296,3	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PDZD8-1	chr10:119001172-119001294	ENSG00000225936.1

No data

Variant related genes	Relation type
ENSG00000223247	Chromatin interaction
ENSG00000188825	Chromatin interaction
ENSG00000133316	Chromatin interaction
ENSG00000236383	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv896038	chr10:118917671-119002667	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
3	esv1812234	chr10:118977123-119004095	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv3436378	chr10:118999787-119002535	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118999600-119001800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
2	chr10:118999600-119002000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr10:118999800-119001400	Active TSS	H9 Cell Line	embryonic stem cell
4	chr10:118999800-119001400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
5	chr10:118999800-119001400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:118999800-119001600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
7	chr10:118999800-119001600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
8	chr10:118999800-119001600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
9	chr10:119000000-119001600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
10	chr10:119000000-119001800	Flanking Active TSS	Primary hematopoietic stem cells	blood
11	chr10:119000200-119001400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:119000200-119001400	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr10:119000200-119001400	Bivalent/Poised TSS	Right Ventricle	heart
14	chr10:119000200-119001400	Bivalent/Poised TSS	HepG2	liver
15	chr10:119000200-119001600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
16	chr10:119000200-119001600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr10:119000200-119001600	Bivalent Enhancer	Spleen	Spleen
18	chr10:119000200-119001800	Active TSS	Ovary	ovary
19	chr10:119000200-119002200	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr10:119000200-119002200	Bivalent/Poised TSS	Thymus	Thymus
21	chr10:119000400-119001400	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
22	chr10:119000400-119001400	Bivalent Enhancer	Lung	lung
23	chr10:119000400-119001400	Bivalent/Poised TSS	Psoas Muscle	Psoas
24	chr10:119000400-119001400	Active TSS	Right Atrium	heart
25	chr10:119000400-119001600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:119000400-119001600	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr10:119000400-119001600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr10:119000400-119001600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
29	chr10:119000400-119001600	Enhancers	Liver	Liver
30	chr10:119000400-119001800	Bivalent/Poised TSS	Fetal Thymus	thymus
31	chr10:119000400-119002000	Active TSS	Primary T cells from cord blood	blood
32	chr10:119000600-119001400	Active TSS	Primary neutrophils fromperipheralblood	blood
33	chr10:119000600-119001400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr10:119000600-119001400	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
35	chr10:119000600-119001400	Active TSS	Brain Angular Gyrus	brain
36	chr10:119000600-119001400	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
37	chr10:119000600-119001600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr10:119000800-119001400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr10:119000800-119001400	Bivalent/Poised TSS	Brain Germinal Matrix	brain
40	chr10:119000800-119001400	Bivalent Enhancer	Colonic Mucosa	Colon
41	chr10:119000800-119001800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
42	chr10:119001000-119001400	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr10:119001000-119001400	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:119001000-119001400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
45	chr10:119001000-119001400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr10:119001000-119001400	Bivalent/Poised TSS	NHEK	skin
47	chr10:119001000-119002000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr10:119001200-119001400	Bivalent/Poised TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr10:119001200-119001400	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
50	chr10:119001200-119001400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood

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