The 2.0 version of rSNPBase

Variant report

Variant rs554652029
Chromosome Location chr6:5727069-5727070
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:5717400-5729000 Weak transcription Fetal Stomach stomach
2 chr6:5717600-5729000 Weak transcription Fetal Lung lung
3 chr6:5717600-5729600 Weak transcription Brain Substantia Nigra brain
4 chr6:5718000-5729200 Weak transcription NHEK skin
5 chr6:5723000-5744200 Weak transcription Right Ventricle heart
6 chr6:5723800-5729000 Weak transcription Lung lung
7 chr6:5724200-5728000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
8 chr6:5724200-5729200 Weak transcription iPS-20b Cell Line embryonic stem cell
9 chr6:5724600-5727200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
10 chr6:5724600-5727800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr6:5724600-5728000 Weak transcription Fetal Brain Male brain
12 chr6:5724600-5728200 Weak transcription Cortex derived primary cultured neurospheres brain
13 chr6:5724600-5728800 Weak transcription HUES64 Cell Line embryonic stem cell
14 chr6:5724600-5729000 Weak transcription ES-I3 Cell Line embryonic stem cell
15 chr6:5724600-5729200 Weak transcription H9 Cell Line embryonic stem cell
16 chr6:5724600-5729200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
17 chr6:5724600-5729200 Weak transcription NH-A brain
18 chr6:5724800-5729200 Weak transcription Osteobl bone
19 chr6:5724800-5729400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr6:5725000-5727200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
21 chr6:5725000-5727200 Weak transcription Fetal Muscle Leg muscle
22 chr6:5725000-5727200 Weak transcription Spleen Spleen
23 chr6:5725000-5727800 Weak transcription HUES6 Cell Line embryonic stem cell
24 chr6:5725000-5728400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
25 chr6:5725000-5729000 Weak transcription H1 Cell Line embryonic stem cell
26 chr6:5725000-5729800 Enhancers Primary B cells from cord blood blood
27 chr6:5725000-5730000 Enhancers Primary B cells from peripheral blood blood
28 chr6:5725000-5731600 Weak transcription Colonic Mucosa Colon
29 chr6:5725000-5737000 Weak transcription Primary T cells from cord blood blood
30 chr6:5725200-5749200 Weak transcription Breast Myoepithelial Primary Cells Breast
31 chr6:5725600-5727200 Weak transcription GM12878-XiMat blood
32 chr6:5726000-5749400 Weak transcription Fetal Intestine Small intestine
33 chr6:5726800-5728200 Enhancers HSMMtube muscle
34 chr6:5727000-5727200 Flanking Active TSS iPS DF 19.11 Cell Line embryonic stem cell
35 chr6:5727000-5727400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
36 chr6:5727000-5727600 Enhancers Fetal Muscle Trunk muscle
37 chr6:5727000-5727800 Enhancers Primary Natural Killer cells fromperipheralblood blood
38 chr6:5727000-5728200 Enhancers Skeletal Muscle Female skeletal muscle
39 chr6:5727000-5728400 Enhancers Fetal Thymus thymus
40 chr6:5727000-5729200 Enhancers HSMM muscle
41 chr6:5727000-5762400 Weak transcription Stomach Smooth Muscle stomach

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Last update: Aug 31, 2015