Variant report

Variant	rs554661592
Chromosome Location	chr4:128982453-128982454
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZC3H11A	chr4:128981930-128982653	K562	blood:	n/a	n/a
2	POLR2A	chr4:128981341-128983767	GM12878	blood:	n/a	n/a
3	TAF1	chr4:128981705-128983761	H1-hESC	embryonic stem cell:	n/a	n/a
4	YY1	chr4:128981959-128983429	K562	blood:	n/a	chr4:128982953-128982967 chr4:128982869-128982878 chr4:128982410-128982424 chr4:128982223-128982237 chr4:128982631-128982642 chr4:128982958-128982967 chr4:128982929-128982938 chr4:128983261-128983275 chr4:128981988-128982002 chr4:128982145-128982159 chr4:128982155-128982169 chr4:128982896-128982910
5	EP300	chr4:128981986-128982631	H1-hESC	embryonic stem cell:	n/a	n/a
6	NR2F2	chr4:128981757-128982683	MCF-7	breast:	n/a	n/a
7	RAD21	chr4:128982127-128983622	IMR90	lung:	n/a	chr4:128982347-128982361
8	USF2	chr4:128981963-128982608	GM12878	blood:	n/a	chr4:128982345-128982361 chr4:128982410-128982426 chr4:128982321-128982337
9	E2F4	chr4:128981415-128982595	MCF10A-Er-Src	breast:	n/a	chr4:128981810-128981819 chr4:128982158-128982168 chr4:128981810-128981822 chr4:128981966-128981976
10	TCF12	chr4:128981955-128982727	GM12878	blood:	n/a	chr4:128982286-128982296
11	TAF1	chr4:128981891-128982693	GM12891	blood:	n/a	n/a
12	ZBTB33	chr4:128982158-128982517	A549	lung:	n/a	chr4:128982344-128982359
13	POLR2A	chr4:128981701-128983708	Hela-S3	cervix:	n/a	n/a
14	POLR2A	chr4:128981689-128982806	ECC-1	luminal epithelium:	n/a	n/a
15	FOSL2	chr4:128982030-128982657	HepG2	liver:	n/a	n/a
16	POLR2A	chr4:128981635-128983750	H1-hESC	embryonic stem cell:	n/a	n/a
17	JUND	chr4:128981667-128982567	H1-hESC	embryonic stem cell:	n/a	n/a
18	POLR2A	chr4:128981803-128982959	MCF-7	breast:	n/a	n/a
19	RELA	chr4:128981728-128983580	GM15510	blood:	n/a	n/a
20	ZNF263	chr4:128981770-128983633	K562	blood:	n/a	chr4:128982256-128982277
21	PML	chr4:128981665-128982733	K562	blood:	n/a	n/a
22	FOXP2	chr4:128982170-128982569	SK-N-MC	brain:	n/a	n/a
23	MYC	chr4:128981926-128982487	GM12878	blood:	n/a	chr4:128982117-128982126 chr4:128982024-128982034 chr4:128982117-128982127
24	STAT5A	chr4:128982010-128982557	K562	blood:	n/a	n/a
25	EGR1	chr4:128982017-128982684	K562	blood:	n/a	chr4:128982155-128982168
26	TAF7	chr4:128981871-128982719	H1-hESC	embryonic stem cell:	n/a	n/a
27	MYC	chr4:128982364-128982551	HUVEC	blood vessel:	n/a	n/a
28	POLR2A	chr4:128981693-128982760	GM12892	blood:	n/a	n/a
29	USF1	chr4:128982411-128982590	A549	lung:	n/a	n/a
30	TAF1	chr4:128982263-128982630	A549	lung:	n/a	n/a
31	MYC	chr4:128981397-128983701	K562	blood:	n/a	chr4:128982117-128982126 chr4:128982024-128982034 chr4:128983439-128983448 chr4:128983126-128983135 chr4:128982117-128982127
32	REST	chr4:128982376-128982508	GM12878	blood:	n/a	n/a
33	SIN3AK20	chr4:128981899-128982584	SK-N-SH	brain:	n/a	n/a
34	MAX	chr4:128981696-128983718	K562	blood:	n/a	chr4:128982117-128982126 chr4:128982024-128982034 chr4:128983439-128983448 chr4:128983126-128983135 chr4:128982117-128982127
35	POLR2A	chr4:128981730-128983695	ECC-1	luminal epithelium:	n/a	n/a
36	YY1	chr4:128981912-128982657	ECC-1	luminal epithelium:	n/a	chr4:128982410-128982424 chr4:128982223-128982237 chr4:128982631-128982642 chr4:128981988-128982002 chr4:128982145-128982159 chr4:128982155-128982169
37	POLR2A	chr4:128981211-128982633	K562	blood:	n/a	n/a
38	RUNX3	chr4:128981701-128982672	GM12878	blood:	n/a	n/a
39	NFYB	chr4:128982212-128982562	GM12878	blood:	n/a	chr4:128982239-128982249
40	TBP	chr4:128981567-128982674	HepG2	liver:	n/a	n/a
41	POLR2A	chr4:128981660-128983600	GM12878	blood:	n/a	n/a
42	RCOR1	chr4:128981537-128983729	K562	blood:	n/a	n/a
43	PAX5	chr4:128982146-128982705	GM12891	blood:	n/a	n/a
44	PML	chr4:128981937-128982668	K562	blood:	n/a	n/a
45	NFYA	chr4:128982076-128982585	Hela-S3	cervix:	n/a	chr4:128982239-128982249
46	POLR2A	chr4:128981661-128983699	K562	blood:	n/a	n/a
47	RCOR1	chr4:128981871-128982543	K562	blood:	n/a	n/a
48	USF2	chr4:128982304-128982492	Hela-S3	cervix:	n/a	chr4:128982345-128982361 chr4:128982410-128982426 chr4:128982321-128982337
49	E2F6	chr4:128981885-128982679	A549	lung:	n/a	chr4:128982158-128982168 chr4:128981966-128981976
50	MAX	chr4:128981832-128982566	H1-hESC	embryonic stem cell:	n/a	chr4:128982117-128982126 chr4:128982024-128982034 chr4:128982117-128982127

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:128982446-128982496	HEK293	kidney:	embryo
2	chr4:128982446-128982496	HRE	kidney:	n/a
3	chr4:128982446-128982496	PFSK-1	brain:	n/a
4	chr4:128982446-128982496	Hela-S3	cervix:	n/a
5	chr4:128982446-128982496	MCF10A-Er-Src	breast:	n/a
6	chr4:128982446-128982496	GM12892	blood:	n/a
7	chr4:128982446-128982496	BJ	skin:	n/a
8	chr4:128982446-128982496	HIPEpiC	eye:	n/a
9	chr4:128982446-128982496	LNCaP	prostate:	n/a
10	chr4:128982446-128982496	HAEpiC	amniotic membrane:	n/a
11	chr4:128982446-128982496	AG04450	lung:	fetal
12	chr4:128982446-128982496	BE2_C	brain:	n/a
13	chr4:128982446-128982496	NHDF-neo	bronchial:	n/a
14	chr4:128982446-128982496	NT2-D1	testis:	n/a
15	chr4:128982446-128982496	A549	lung:	n/a
16	chr4:128982446-128982496	NH-A	brain:	n/a
17	chr4:128982446-128982496	HCF	heart:	n/a
18	chr4:128982446-128982496	ovcar-3	ovarian:	n/a
19	chr4:128982446-128982496	AG09319	gingival:	n/a
20	chr4:128982446-128982496	AoSMC	blood vessel:	n/a
21	chr4:128982446-128982496	SAEC	small airway:	n/a
22	chr4:128982446-128982496	GM06990	blood:	n/a
23	chr4:128982446-128982496	AG04449	skin:	fetal
24	chr4:128982446-128982496	SK-N-SH_RA	brain:	n/a
25	chr4:128982446-128982496	NB4	blood:	n/a
26	chr4:128982446-128982496	HRCEpiC	kidney:	n/a
27	chr4:128982446-128982496	K562	blood:	n/a
28	chr4:128982446-128982496	AG10803	skin:	n/a
29	chr4:128982446-128982496	HMEC	breast:	n/a
30	chr4:128982446-128982496	SK-N-SH	brain:	n/a
31	chr4:128982446-128982496	CMK	blood:	n/a
32	chr4:128982446-128982496	HRPEpiC	eye:	n/a
33	chr4:128982446-128982496	HNPCEpiC	eye:	n/a
34	chr4:128982446-128982496	HL-60	blood:	n/a
35	chr4:128982446-128982496	MCF-7	breast:	n/a
36	chr4:128982446-128982496	HEEpiC	esophagus:	n/a
37	chr4:128982446-128982496	RPTEC	kidney:	n/a
38	chr4:128982446-128982496	Hepatocyte	liver:	n/a
39	chr4:128982446-128982496	ProgFib	skin:	n/a
40	chr4:128982446-128982496	AG09309	skin:	n/a
41	chr4:128982446-128982496	U87	brain:	n/a
42	chr4:128982446-128982496	T-47D	breast:	n/a
43	chr4:128982446-128982496	IMR90	lung:	fetal
44	chr4:128982446-128982496	PANC-1	pancreas:	n/a
45	chr4:128982446-128982496	Jurkat	blood:	n/a
46	chr4:128982446-128982496	HepG2	liver:	n/a
47	chr4:128982446-128982496	SK-N-MC	brain:	n/a
48	chr4:128982446-128982496	H1-hESC	embryonic stem cell:	embryo
49	chr4:128982446-128982496	Caco-2	colon:	n/a
50	chr4:128982446-128982496	HUVEC	blood vessel:	n/a

No.	Distal block	Cell Line	Cell type
1	chr4:128981378..128983346-chr4:128988931..128991317,2	MCF-7	breast:
2	chr4:128884518..128888041-chr4:128980422..128985043,7	MCF-7	breast:
3	chr19:14229250..14230220-chr4:128982049..128982904,2	NB4	blood:
4	chr4:128553197..128555974-chr4:128981706..128984336,2	K562	blood:
5	chr17:79478887..79479404-chr4:128982377..128982993,2	HCT-116	colon:
6	chr4:128981725..128985397-chr4:129207989..129209697,3	K562	blood:
7	chr4:128800019..128803742-chr4:128979765..128984325,9	K562	blood:
8	chr4:128885127..128890546-chr4:128980550..128983845,11	K562	blood:
9	chr4:128980795..128982891-chr4:129730267..129732892,3	K562	blood:
10	chr4:128980795..128984031-chr4:129730059..129735028,7	K562	blood:
11	chr4:128981817..128983526-chr4:129043171..129045384,2	MCF-7	breast:
12	chr4:128701934..128705815-chr4:128979420..128985014,7	K562	blood:
13	chr4:128884064..128888795-chr4:128980591..128984632,7	MCF-7	breast:
14	chr4:128701934..128705815-chr4:128979420..128984468,5	K562	blood:
15	chr4:128980817..128984026-chr4:129207052..129210590,3	MCF-7	breast:
16	chr4:128981698..128985397-chr4:129207989..129210555,4	K562	blood:
17	chr16:67217539..67218173-chr4:128981980..128982888,2	Hela-S3	cervix:
18	chr15:45003006..45003782-chr4:128982373..128982889,2	Hela-S3	cervix:
19	chr4:128980866..128984600-chr4:128984636..128991176,13	K562	blood:
20	chr4:128702147..128704685-chr4:128980177..128982661,2	MCF-7	breast:
21	chr4:128980375..128984020-chr4:128989687..128993521,7	MCF-7	breast:
22	chr4:128981936..128982808-chrX:48754752..48755652,2	Hela-S3	cervix:
23	chr2:85132320..85133212-chr4:128982045..128982946,2	Hela-S3	cervix:
24	chr4:128884948..128891801-chr4:128980633..128984811,17	K562	blood:
25	chr1:110577159..110578119-chr4:128981949..128982607,2	Hela-S3	cervix:
26	chr4:128800672..128803742-chr4:128979765..128985676,12	K562	blood:
27	chr4:128593863..128595593-chr4:128981619..128984198,2	K562	blood:

Variant related genes	Relation type
LARP1B	TF binding region
LARP1B	CpG island
ENSG00000126768	Chromatin interaction
ENSG00000164073	Chromatin interaction
ENSG00000142731	Chromatin interaction
ENSG00000267783	Chromatin interaction
ENSG00000196123	Chromatin interaction
ENSG00000034510	Chromatin interaction
ENSG00000164070	Chromatin interaction
ENSG00000184009	Chromatin interaction
ENSG00000138709	Chromatin interaction
ENSG00000143093	Chromatin interaction
ENSG00000166710	Chromatin interaction
ENSG00000164066	Chromatin interaction
ENSG00000241651	Chromatin interaction
ENSG00000077684	Chromatin interaction
ENSG00000102103	Chromatin interaction
ENSG00000164040	Chromatin interaction
ENSG00000229474	Chromatin interaction
ENSG00000164074	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:66 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879915	chr4:128167093-129150590	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv879923	chr4:128554404-129068179	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv1792644	chr4:128566686-129133826	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv1795770	chr4:128566686-129145581	Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
5	nsv532740	chr4:128710011-129035335	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	esv3416036	chr4:128782694-129133956	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv1033701	chr4:128803159-129095018	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
8	esv1841203	chr4:128817558-129043809	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
9	nsv1029890	chr4:128828468-129041302	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
10	esv1817670	chr4:128850073-129012181	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
11	esv1821180	chr4:128850073-129012181	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
12	nsv1018952	chr4:128850790-129082821	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
13	nsv595388	chr4:128853913-129084831	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
14	nsv1019555	chr4:128901614-129088903	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
15	esv3390887	chr4:128932563-129207255	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
16	esv1800378	chr4:128954647-128986874	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
17	esv1801389	chr4:128954647-128986874	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
18	esv1802601	chr4:128954647-128986874	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
19	esv3353674	chr4:128958396-128983454	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
20	esv3430549	chr4:128958396-128987680	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
21	esv3385008	chr4:128959396-128991050	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
22	esv1795256	chr4:128960569-128983211	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
23	esv1797884	chr4:128960569-128983211	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
24	esv1800439	chr4:128972357-128986874	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
25	esv1800138	chr4:128981336-128983211	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
26	esv1803700	chr4:128981336-128983211	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
27	esv1836544	chr4:128981336-128983211	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
28	esv1838939	chr4:128981336-128983211	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
29	esv1802578	chr4:128981336-128986874	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
30	esv1836174	chr4:128981336-128995640	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
31	esv1837247	chr4:128981336-128995640	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
32	esv13297	chr4:128982058-128983393	Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
33	nsv595389	chr4:128982085-128982659	Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
34	nsv595390	chr4:128982085-128982759	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
35	esv1792542	chr4:128982085-128983211	Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
36	esv1793203	chr4:128982085-128983211	Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
37	esv1794122	chr4:128982085-128983211	Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
38	esv1796479	chr4:128982085-128983211	Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
39	esv1798956	chr4:128982085-128983211	Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
40	esv1799109	chr4:128982085-128983211	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
41	esv1807268	chr4:128982085-128983211	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
42	esv1808067	chr4:128982085-128983211	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
43	esv1809869	chr4:128982085-128983211	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
44	esv1813242	chr4:128982085-128983211	Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
45	esv1817696	chr4:128982085-128983211	Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
46	esv1820653	chr4:128982085-128983211	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
47	esv1821239	chr4:128982085-128983211	Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
48	esv1824611	chr4:128982085-128983211	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
49	esv1831821	chr4:128982085-128983211	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
50	esv1834238	chr4:128982085-128983211	Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128981000-128982800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr4:128981000-128983200	Active TSS	Rectal Mucosa Donor 29	rectum
3	chr4:128981000-128983600	Active TSS	Liver	Liver
4	chr4:128981000-128983800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:128981000-128984400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:128981000-128984400	Active TSS	Duodenum Mucosa	Duodenum
7	chr4:128981000-128984400	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr4:128981000-128984400	Active TSS	Rectal Smooth Muscle	rectum
9	chr4:128981200-128983200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
10	chr4:128981200-128983400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:128981200-128983600	Active TSS	Primary T killer memory cells from peripheral blood	blood
12	chr4:128981200-128983600	Active TSS	Colon Smooth Muscle	Colon
13	chr4:128981200-128983600	Active TSS	Osteobl	bone
14	chr4:128981200-128983800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:128981200-128983800	Active TSS	Brain Hippocampus Middle	brain
16	chr4:128981200-128983800	Active TSS	Psoas Muscle	Psoas
17	chr4:128981200-128984000	Active TSS	Duodenum Smooth Muscle	Duodenum
18	chr4:128981200-128984000	Active TSS	NHEK	skin
19	chr4:128981200-128984200	Active TSS	Brain Angular Gyrus	brain
20	chr4:128981200-128984200	Active TSS	Fetal Intestine Large	intestine
21	chr4:128981200-128984200	Active TSS	GM12878-XiMat	blood
22	chr4:128981200-128984400	Active TSS	ES-I3 Cell Line	embryonic stem cell
23	chr4:128981200-128984400	Active TSS	HUES64 Cell Line	embryonic stem cell
24	chr4:128981200-128984400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr4:128981200-128984400	Active TSS	Fetal Intestine Small	intestine
26	chr4:128981200-128984400	Active TSS	Fetal Kidney	kidney
27	chr4:128981200-128984400	Active TSS	Fetal Stomach	stomach
28	chr4:128981200-128984400	Active TSS	Rectal Mucosa Donor 31	rectum
29	chr4:128981400-128982800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr4:128981400-128983400	Active TSS	Fetal Lung	lung
31	chr4:128981400-128983400	Active TSS	Fetal Muscle Trunk	muscle
32	chr4:128981400-128983400	Active TSS	Fetal Thymus	thymus
33	chr4:128981400-128983400	Active TSS	Skeletal Muscle Male	skeletal muscle
34	chr4:128981400-128983400	Active TSS	Skeletal Muscle Female	skeletal muscle
35	chr4:128981400-128983400	Active TSS	Thymus	Thymus
36	chr4:128981400-128983600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr4:128981400-128983600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr4:128981400-128983600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr4:128981400-128983600	Active TSS	Brain Anterior Caudate	brain
40	chr4:128981400-128983800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr4:128981400-128983800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr4:128981400-128983800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr4:128981400-128983800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
44	chr4:128981400-128983800	Active TSS	Esophagus	oesophagus
45	chr4:128981400-128984000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr4:128981400-128984000	Active TSS	Breast Myoepithelial Primary Cells	Breast
47	chr4:128981400-128984000	Active TSS	Brain Cingulate Gyrus	brain
48	chr4:128981400-128984000	Active TSS	Colonic Mucosa	Colon
49	chr4:128981400-128984000	Active TSS	Left Ventricle	heart
50	chr4:128981400-128984000	Active TSS	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links