The 2.0 version of rSNPBase

Variant report

Variant rs554702803
Chromosome Location chr12:39806978-39806979
allele -/A
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:39785000-39829200 Weak transcription K562 blood
2 chr12:39790000-39816200 Weak transcription Right Ventricle heart
3 chr12:39794200-39824800 Weak transcription Right Atrium heart
4 chr12:39795400-39816600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
5 chr12:39797600-39812000 Weak transcription HMEC breast
6 chr12:39798200-39807000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
7 chr12:39798200-39809600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
8 chr12:39800800-39807400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr12:39800800-39807400 Weak transcription GM12878-XiMat blood
10 chr12:39800800-39807800 Weak transcription Ovary ovary
11 chr12:39800800-39812000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
12 chr12:39800800-39814800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
13 chr12:39801000-39807200 Weak transcription Brain Inferior Temporal Lobe brain
14 chr12:39801000-39808000 Weak transcription Brain Anterior Caudate brain
15 chr12:39801000-39815800 Weak transcription Psoas Muscle Psoas
16 chr12:39801200-39808200 Weak transcription A549 lung
17 chr12:39801400-39807000 Weak transcription Brain Substantia Nigra brain
18 chr12:39801400-39807400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
19 chr12:39801600-39811000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
20 chr12:39802000-39811800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr12:39802400-39809200 Weak transcription Left Ventricle heart
22 chr12:39802400-39816000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
23 chr12:39803400-39807200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr12:39804000-39808200 Weak transcription Duodenum Mucosa Duodenum
25 chr12:39804000-39811800 Weak transcription Adipose Nuclei Adipose
26 chr12:39804400-39809000 Weak transcription Sigmoid Colon Sigmoid Colon
27 chr12:39805000-39807200 Weak transcription Fetal Stomach stomach
28 chr12:39805000-39807800 Weak transcription Fetal Heart heart
29 chr12:39805200-39807400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
30 chr12:39805200-39811800 Weak transcription HepG2 liver
31 chr12:39805400-39807400 Bivalent Enhancer HUES6 Cell Line embryonic stem cell
32 chr12:39806000-39808000 Weak transcription Fetal Intestine Small intestine
33 chr12:39806400-39807600 Weak transcription Fetal Brain Female brain
34 chr12:39806400-39808000 Weak transcription Cortex derived primary cultured neurospheres brain
35 chr12:39806400-39808000 Weak transcription Brain Germinal Matrix brain
36 chr12:39806400-39809200 Weak transcription Placenta Placenta
37 chr12:39806400-39809400 Weak transcription Breast Myoepithelial Primary Cells Breast
38 chr12:39806400-39809600 Weak transcription Liver Liver
39 chr12:39806400-39813000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr12:39806600-39807200 Bivalent Enhancer HUES48 Cell Line embryonic stem cell
41 chr12:39806600-39811800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
42 chr12:39806600-39834200 Weak transcription Hela-S3 cervix
43 chr12:39806800-39807200 Bivalent Enhancer iPS-20b Cell Line embryonic stem cell
44 chr12:39806800-39808200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived

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Last update: Aug 31, 2015