Variant report

Variant	rs554703462
Chromosome Location	chr5:177365935-177365936
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024444	chr5:176751921-177427715	Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	142 gene(s)	inside rSNPs	diseases
2	esv2752795	chr5:176898619-177488281	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
3	nsv1033211	chr5:177133646-177383386	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1030383	chr5:177310325-177571254	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
5	nsv883184	chr5:177311043-177488281	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv883185	chr5:177357964-177401509	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv521629	chr5:177364884-177396200	Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv3377185	chr5:177365371-177368219	Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177364800-177366200	Enhancers	Primary T cells fromperipheralblood	blood
2	chr5:177365200-177366000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr5:177365400-177366000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr5:177365400-177366200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:177365400-177366200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr5:177365400-177366200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr5:177365400-177366200	Bivalent Enhancer	Fetal Muscle Leg	muscle
8	chr5:177365600-177366000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr5:177365600-177366000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr5:177365600-177366000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr5:177365600-177366000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr5:177365600-177366000	Bivalent Enhancer	Fetal Brain Female	brain
13	chr5:177365600-177366000	Bivalent Enhancer	Fetal Intestine Small	intestine
14	chr5:177365600-177366200	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr5:177365600-177366200	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr5:177365600-177366200	Bivalent Enhancer	Fetal Stomach	stomach
17	chr5:177365600-177366400	Enhancers	Primary B cells from peripheral blood	blood
18	chr5:177365600-177366800	Active TSS	iPS-15b Cell Line	embryonic stem cell
19	chr5:177365600-177366800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
20	chr5:177365600-177366800	Enhancers	Primary B cells from cord blood	blood
21	chr5:177365600-177367000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr5:177365600-177368200	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr5:177365800-177366000	Enhancers	H1 Cell Line	embryonic stem cell
24	chr5:177365800-177366000	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr5:177365800-177366000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
26	chr5:177365800-177366000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr5:177365800-177366000	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr5:177365800-177366200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr5:177365800-177366200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr5:177365800-177366200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr5:177365800-177366200	Enhancers	Primary T cells from cord blood	blood
32	chr5:177365800-177366200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr5:177365800-177366200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr5:177365800-177366200	Enhancers	Liver	Liver
35	chr5:177365800-177366200	Bivalent Enhancer	Fetal Brain Male	brain
36	chr5:177365800-177366200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
37	chr5:177365800-177366200	Enhancers	Gastric	stomach
38	chr5:177365800-177366200	Flanking Active TSS	Pancreas	Pancrea
39	chr5:177365800-177366400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
40	chr5:177365800-177366400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
41	chr5:177365800-177366400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr5:177365800-177366400	Enhancers	Fetal Lung	lung
43	chr5:177365800-177366600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
44	chr5:177365800-177367000	Active TSS	Brain Germinal Matrix	brain
45	chr5:177365800-177367200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
46	chr5:177365800-177367200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
47	chr5:177365800-177367200	Active TSS	Muscle Satellite Cultured Cells	--
48	chr5:177365800-177367200	Bivalent Enhancer	Fetal Thymus	thymus
49	chr5:177365800-177367400	Active TSS	NHLF	lung

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