Variant report

Variant	rs554705887
Chromosome Location	chr5:52459756-52459757
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949005	chr5:52188028-52808229	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2752745	chr5:52422063-53343529	Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv2444178	chr5:52458447-52460065	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
4	esv3469229	chr5:52458604-52460010	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
5	esv1932351	chr5:52458822-52459868	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
6	esv3469233	chr5:52458845-52459778	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
7	esv3515573	chr5:52458848-52459778	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
8	nsv820944	chr5:52458851-52459795	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
9	esv3515570	chr5:52458896-52459756	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
10	nsv823071	chr5:52458937-52459765	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
11	nsv823072	chr5:52458937-52459795	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:52458200-52460200	Weak transcription	NHDF-Ad	bronchial
2	chr5:52458200-52461800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr5:52458200-52463600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:52458200-52463600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr5:52458200-52463600	Weak transcription	Osteobl	bone
6	chr5:52458400-52460000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:52458400-52461400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:52458600-52460000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:52458800-52461800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr5:52459000-52460400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr5:52459600-52461200	Enhancers	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links