Variant report

Variant	rs554715333
Chromosome Location	chr3:177368026-177368027
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752972	chr3:176924298-177425298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv514189	chr3:177294490-177383578	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv4131	chr3:177366549-177399301	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177360600-177369600	Weak transcription	Fetal Brain Female	brain
2	chr3:177361000-177369800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:177363000-177369600	Weak transcription	Fetal Kidney	kidney
4	chr3:177364800-177369800	Weak transcription	Colon Smooth Muscle	Colon
5	chr3:177364800-177370800	Weak transcription	Psoas Muscle	Psoas
6	chr3:177365800-177370800	Weak transcription	Aorta	Aorta
7	chr3:177366000-177369800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr3:177366800-177370000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr3:177367000-177370000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr3:177367200-177369400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr3:177367200-177370000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr3:177367200-177371000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr3:177368000-177368200	Weak transcription	Fetal Heart	heart
14	chr3:177368000-177368200	Enhancers	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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