Variant report

Variant	rs554719866
Chromosome Location	chr6:164766112-164766113
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:164757750..164761032-chr6:164766105..164769189,4	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029952	chr6:164463355-165268911	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv886919	chr6:164756364-165079834	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv511924	chr6:164762179-165077399	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1016147	chr6:164765938-165046731	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164758800-164767000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:164761800-164766200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:164763000-164767800	Weak transcription	Right Atrium	heart
4	chr6:164764200-164766200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:164764800-164766200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:164764800-164766400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:164765000-164766200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:164765600-164766200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:164765600-164766400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr6:164765800-164766200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr6:164765800-164766200	Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr6:164765800-164766200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:164765800-164766400	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr6:164765800-164767000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:164766000-164766200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr6:164766000-164766200	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr6:164766000-164766400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr6:164766000-164766600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:164766000-164766800	Enhancers	Fetal Stomach	stomach
20	chr6:164766000-164767200	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links