Variant report

Variant	rs554727703
Chromosome Location	chr7:33339870-33339871
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830943	chr7:33167106-33352759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv1792546	chr7:33304218-33346932	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv887925	chr7:33304218-33361323	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3398087	chr7:33339761-33355341	Enhancers ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33317000-33347600	Weak transcription	Pancreas	Pancrea
2	chr7:33328000-33354600	Weak transcription	Ovary	ovary
3	chr7:33334200-33357200	Weak transcription	Gastric	stomach
4	chr7:33339600-33340000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:33339600-33340000	ZNF genes & repeats	Primary T cells from cord blood	blood
6	chr7:33339600-33340000	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr7:33339600-33340000	ZNF genes & repeats	Liver	Liver
8	chr7:33339600-33340000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
9	chr7:33339600-33340000	ZNF genes & repeats	Fetal Lung	lung
10	chr7:33339600-33340000	ZNF genes & repeats	Left Ventricle	heart
11	chr7:33339800-33340000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
12	chr7:33339800-33340000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:33339800-33340600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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