Variant report

Variant	rs554749929
Chromosome Location	chr12:105823524-105823525
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899501	chr12:105819046-105950801	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832507	chr12:105821685-106005186	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105813000-105832400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:105816200-105825400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr12:105817000-105825400	Weak transcription	HSMMtube	muscle
4	chr12:105817800-105827200	Weak transcription	Hela-S3	cervix
5	chr12:105820600-105832600	Weak transcription	Gastric	stomach
6	chr12:105821200-105824200	Enhancers	NHEK	skin
7	chr12:105821200-105824400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr12:105821400-105824000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr12:105821400-105825000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr12:105821600-105828000	Weak transcription	Right Atrium	heart
11	chr12:105822000-105827200	Weak transcription	NH-A	brain
12	chr12:105822400-105826400	Enhancers	Fetal Lung	lung
13	chr12:105822400-105827200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr12:105822600-105827200	Weak transcription	HMEC	breast
15	chr12:105823400-105823600	Enhancers	Fetal Muscle Leg	muscle
16	chr12:105823400-105823600	Enhancers	HUVEC	blood vessel
17	chr12:105823400-105824200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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