Variant report

Variant	rs554765755
Chromosome Location	chr11:72549414-72549415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72547760..72550663-chr11:72556425..72558728,2	MCF-7	breast:
2	chr11:72541766..72544288-chr11:72546935..72549671,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv983041	chr11:72548104-72549896	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72534200-72550000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr11:72540200-72616600	Strong transcription	Primary B cells from peripheral blood	blood
3	chr11:72540600-72589800	Strong transcription	Primary B cells from cord blood	blood
4	chr11:72540800-72554000	Weak transcription	Colonic Mucosa	Colon
5	chr11:72541000-72550800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr11:72541600-72558400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr11:72542000-72553000	Weak transcription	Gastric	stomach
8	chr11:72543000-72551600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr11:72543000-72556400	Weak transcription	K562	blood
10	chr11:72543200-72550600	Weak transcription	Hela-S3	cervix
11	chr11:72543200-72552600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:72543200-72555600	Strong transcription	Fetal Thymus	thymus
13	chr11:72543200-72556800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:72543200-72558200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:72543200-72562200	Weak transcription	A549	lung
16	chr11:72543200-72614800	Weak transcription	Psoas Muscle	Psoas
17	chr11:72543400-72560800	Strong transcription	GM12878-XiMat	blood
18	chr11:72543400-72603000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:72543600-72555400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr11:72544600-72550600	Weak transcription	Esophagus	oesophagus
21	chr11:72545200-72561000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr11:72545600-72554000	Strong transcription	Fetal Intestine Small	intestine
23	chr11:72546000-72554400	Strong transcription	Brain Germinal Matrix	brain
24	chr11:72546000-72555600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr11:72546000-72555800	Strong transcription	Thymus	Thymus
26	chr11:72546000-72557000	Strong transcription	Primary T cells from cord blood	blood
27	chr11:72546000-72557200	Strong transcription	HepG2	liver
28	chr11:72546000-72557600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:72546000-72558000	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr11:72546000-72558600	Strong transcription	Liver	Liver
31	chr11:72546200-72549600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:72546200-72553600	Strong transcription	Fetal Intestine Large	intestine
33	chr11:72546400-72555600	Strong transcription	Dnd41	blood
34	chr11:72546400-72557800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr11:72546600-72553600	Weak transcription	Small Intestine	intestine
36	chr11:72546600-72561000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr11:72546800-72559200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr11:72546800-72561400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr11:72547200-72555600	Strong transcription	Primary hematopoietic stem cells	blood
40	chr11:72547400-72552000	Strong transcription	Placenta	Placenta
41	chr11:72547400-72555600	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr11:72547400-72561200	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr11:72547600-72550200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr11:72547600-72550200	Weak transcription	Fetal Kidney	kidney
45	chr11:72547600-72554800	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr11:72547600-72555000	Weak transcription	Right Atrium	heart
47	chr11:72547600-72555600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr11:72547600-72555600	Genic enhancers	Osteobl	bone
49	chr11:72548000-72559600	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr11:72548200-72549600	Strong transcription	Muscle Satellite Cultured Cells	--

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