Variant report

Variant	rs554793924
Chromosome Location	chr3:156021404-156021405
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv877682	chr3:156019961-156077514	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156010000-156024000	Weak transcription	Aorta	Aorta
2	chr3:156010000-156025400	Weak transcription	Pancreas	Pancrea
3	chr3:156015800-156021600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr3:156018600-156022200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr3:156019600-156021600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:156019600-156021600	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr3:156019600-156022600	Enhancers	Adipose Nuclei	Adipose
8	chr3:156019600-156022800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:156019800-156022000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr3:156019800-156022000	Weak transcription	Osteobl	bone
11	chr3:156019800-156022800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:156020600-156022600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:156020800-156021600	Enhancers	Brain Substantia Nigra	brain
14	chr3:156020800-156021800	Enhancers	Brain Cingulate Gyrus	brain
15	chr3:156020800-156021800	Enhancers	Brain Hippocampus Middle	brain
16	chr3:156020800-156023200	Enhancers	NHLF	lung
17	chr3:156021000-156024000	Enhancers	HUVEC	blood vessel
18	chr3:156021000-156024400	Weak transcription	Left Ventricle	heart
19	chr3:156021200-156021800	Enhancers	Brain Angular Gyrus	brain
20	chr3:156021200-156022800	Enhancers	Brain Anterior Caudate	brain
21	chr3:156021200-156022800	Enhancers	Hela-S3	cervix
22	chr3:156021200-156023000	Enhancers	NHDF-Ad	bronchial
23	chr3:156021400-156021600	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr3:156021400-156021600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr3:156021400-156021600	Enhancers	Right Ventricle	heart
26	chr3:156021400-156021800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr3:156021400-156021800	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr3:156021400-156022200	Enhancers	Pancreatic Islets	Pancreatic Islet
29	chr3:156021400-156022800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr3:156021400-156035200	Weak transcription	Stomach Mucosa	stomach

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