Variant report

Variant	rs554846790
Chromosome Location	chr4:153090466-153090467
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880341	chr4:152861685-153110256	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv880774	chr4:153035743-153121818	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv968016	chr4:153090362-153094972	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:153078000-153090600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:153086000-153094400	Weak transcription	Aorta	Aorta
3	chr4:153086600-153090600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr4:153087200-153090600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr4:153090000-153090800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:153090200-153090600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:153090200-153091000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr4:153090200-153091000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr4:153090200-153091000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr4:153090200-153091000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr4:153090200-153091000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr4:153090200-153091200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr4:153090400-153090600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr4:153090400-153091000	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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