Variant report

Variant	rs554852267
Chromosome Location	chr10:48828681-48828682
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:48828680-48828730	SAEC	small airway:	n/a
2	chr10:48828680-48828730	HUVEC	blood vessel:	n/a
3	chr10:48828680-48828730	A549	lung:	n/a
4	chr10:48828680-48828730	HCM	heart:	n/a
5	chr10:48828680-48828730	HepG2	liver:	n/a
6	chr10:48828680-48828730	T-47D	breast:	n/a
7	chr10:48828680-48828730	BJ	skin:	n/a
8	chr10:48828680-48828730	HEEpiC	esophagus:	n/a
9	chr10:48828680-48828730	HRCEpiC	kidney:	n/a
10	chr10:48828680-48828730	Caco-2	colon:	n/a
11	chr10:48828680-48828730	HEK293	kidney:	embryo
12	chr10:48828680-48828730	NH-A	brain:	n/a
13	chr10:48828680-48828730	HPAEpiC	pulmonary alveolar:	n/a
14	chr10:48828680-48828730	NB4	blood:	n/a
15	chr10:48828680-48828730	IMR90	lung:	fetal
16	chr10:48828680-48828730	SK-N-SH_RA	brain:	n/a
17	chr10:48828680-48828730	AG10803	skin:	n/a
18	chr10:48828680-48828730	PFSK-1	brain:	n/a
19	chr10:48828680-48828730	AoSMC	blood vessel:	n/a
20	chr10:48828680-48828730	Jurkat	blood:	n/a
21	chr10:48828680-48828730	GM12891	blood:	n/a
22	chr10:48828680-48828730	GM06990	blood:	n/a
23	chr10:48828680-48828730	SK-N-SH	brain:	n/a
24	chr10:48828680-48828730	H1-hESC	embryonic stem cell:	embryo
25	chr10:48828680-48828730	HCPEpiC	choroid plexus:	n/a
26	chr10:48828680-48828730	ECC-1	luminal epithelium:	n/a
27	chr10:48828680-48828730	SK-N-MC	brain:	n/a
28	chr10:48828680-48828730	GM12892	blood:	n/a
29	chr10:48828680-48828730	HMEC	breast:	n/a
30	chr10:48828680-48828730	GM12878	blood:	n/a
31	chr10:48828680-48828730	SKMC	muscle:	n/a
32	chr10:48828680-48828730	HCT-116	colon:	n/a
33	chr10:48828680-48828730	Hepatocyte	liver:	n/a
34	chr10:48828680-48828730	HRPEpiC	eye:	n/a
35	chr10:48828680-48828730	NHBE	bronchial:	n/a
36	chr10:48828680-48828730	BE2_C	brain:	n/a
37	chr10:48828680-48828730	U87	brain:	n/a
38	chr10:48828680-48828730	LNCaP	prostate:	n/a
39	chr10:48828680-48828730	HRE	kidney:	n/a
40	chr10:48828680-48828730	K562	blood:	n/a
41	chr10:48828680-48828730	MCF-7	breast:	n/a
42	chr10:48828680-48828730	HCF	heart:	n/a
43	chr10:48828680-48828730	AG04449	skin:	fetal
44	chr10:48828680-48828730	HAEpiC	amniotic membrane:	n/a
45	chr10:48828680-48828730	NT2-D1	testis:	n/a
46	chr10:48828680-48828730	AG09319	gingival:	n/a
47	chr10:48828680-48828730	GM19239	blood:	n/a
48	chr10:48828680-48828730	ovcar-3	ovarian:	n/a
49	chr10:48828680-48828730	AG09309	skin:	n/a
50	chr10:48828680-48828730	PrEC	prostate:	n/a

No data

Variant related genes	Relation type
PTPN20B	CpG island

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758218	chr10:48593396-49299273	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv2759748	chr10:48593396-49299273	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1048083	chr10:48663587-49292521	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv895347	chr10:48664066-49299273	Strong transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1041008	chr10:48714571-49287591	Transcr. at gene 5' and 3' Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1051932	chr10:48714571-49292521	Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription	TF binding region CpG island lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv1039125	chr10:48714571-49299273	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv1045833	chr10:48722696-49292521	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv1048052	chr10:48771938-49292521	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS	TF binding region CpG island lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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