Variant report

Variant	rs554873929
Chromosome Location	chr9:18921265-18921266
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:18920619..18922521-chr9:18924227..18925910,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv949111	chr9:18758205-18994588	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv1017820	chr9:18882219-19587377	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
7	nsv540078	chr9:18882219-19587377	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
8	nsv466282	chr9:18920357-18960393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv471289	chr9:18920357-18960393	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv613727	chr9:18920357-18960393	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18909800-18924400	Weak transcription	Aorta	Aorta
2	chr9:18911000-18922200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr9:18912000-18922200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr9:18912400-18922000	Weak transcription	HSMM	muscle
5	chr9:18912400-18935400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:18917800-18922000	Weak transcription	Right Atrium	heart
7	chr9:18919400-18922200	Enhancers	Fetal Heart	heart
8	chr9:18919400-18922800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:18919800-18922600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr9:18919800-18922600	Enhancers	Colon Smooth Muscle	Colon
11	chr9:18919800-18923000	Enhancers	Osteobl	bone
12	chr9:18919800-18923200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:18919800-18923600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:18919800-18923800	Enhancers	Fetal Muscle Leg	muscle
15	chr9:18920200-18922200	Enhancers	Rectal Smooth Muscle	rectum
16	chr9:18920200-18924000	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr9:18920400-18921600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:18920600-18921400	Weak transcription	Fetal Lung	lung
19	chr9:18920600-18921400	Weak transcription	Fetal Stomach	stomach
20	chr9:18920600-18921400	Weak transcription	Left Ventricle	heart
21	chr9:18920600-18922200	Weak transcription	Esophagus	oesophagus
22	chr9:18920600-18922200	Enhancers	HSMMtube	muscle
23	chr9:18920800-18923600	Enhancers	Stomach Smooth Muscle	stomach
24	chr9:18921000-18922000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr9:18921000-18922000	Weak transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links