Variant report

Variant	rs554888301
Chromosome Location	chr9:96850433-96850434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96845151..96851769-chr9:96927067..96931565,10	K562	blood:
2	chr9:96849522..96851731-chr9:96920134..96921738,2	MCF-7	breast:
3	chr9:96845151..96850974-chr9:96927067..96931575,8	K562	blood:
4	chr9:96793114..96795953-chr9:96849084..96851331,2	K562	blood:
5	chr9:96848883..96850819-chr9:96911987..96913565,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000269946	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv482457	chr9:96813852-96996170	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	217 gene(s)	inside rSNPs	diseases
3	nsv1043704	chr9:96816552-96873018	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv831655	chr9:96834042-97042009	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	218 gene(s)	inside rSNPs	diseases
5	nsv893591	chr9:96849137-96883271	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96822400-96859800	Weak transcription	Psoas Muscle	Psoas
2	chr9:96824200-96860000	Weak transcription	Aorta	Aorta
3	chr9:96824200-96869600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr9:96828200-96859600	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr9:96828200-96860800	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr9:96828200-96862000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr9:96828200-96868200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr9:96829600-96872400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr9:96832000-96859800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr9:96834400-96859800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr9:96835400-96861800	Weak transcription	Primary B cells from cord blood	blood
12	chr9:96837000-96857400	Weak transcription	HSMM	muscle
13	chr9:96837200-96857400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr9:96837200-96858600	Weak transcription	Dnd41	blood
15	chr9:96837200-96859800	Weak transcription	Fetal Intestine Small	intestine
16	chr9:96837400-96850600	Weak transcription	Adipose Nuclei	Adipose
17	chr9:96837400-96860200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr9:96837600-96859200	Weak transcription	Primary T cells from cord blood	blood
19	chr9:96840200-96863600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:96842600-96858200	Weak transcription	HSMMtube	muscle
21	chr9:96843600-96857000	Weak transcription	Colonic Mucosa	Colon
22	chr9:96845000-96853400	Weak transcription	GM12878-XiMat	blood
23	chr9:96845200-96857600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr9:96845600-96858200	Weak transcription	Right Ventricle	heart
25	chr9:96845600-96858400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr9:96845600-96885400	Weak transcription	Gastric	stomach
27	chr9:96846000-96870600	Weak transcription	Rectal Smooth Muscle	rectum
28	chr9:96846200-96859800	Weak transcription	Ovary	ovary
29	chr9:96847000-96857000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr9:96847000-96859000	Weak transcription	Lung	lung
31	chr9:96847000-96859800	Weak transcription	Pancreas	Pancrea
32	chr9:96847000-96860200	Weak transcription	Fetal Muscle Trunk	muscle
33	chr9:96847200-96859000	Weak transcription	Fetal Brain Male	brain
34	chr9:96847200-96859000	Weak transcription	Fetal Brain Female	brain
35	chr9:96847600-96856800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr9:96847600-96859200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr9:96847800-96850800	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr9:96847800-96857000	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr9:96847800-96857400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr9:96847800-96859800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr9:96847800-96859800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr9:96847800-96860200	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr9:96847800-96860200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr9:96847800-96860400	Weak transcription	Spleen	Spleen
45	chr9:96847800-96862600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr9:96848000-96863200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr9:96848200-96857000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr9:96848600-96858600	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr9:96849000-96851400	Weak transcription	Small Intestine	intestine
50	chr9:96849000-96857600	Weak transcription	Stomach Smooth Muscle	stomach

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