Variant report

Variant	rs554893970
Chromosome Location	chr4:121808285-121808286
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv980152	chr4:121807702-121817738	ZNF genes & repeats Weak transcription Strong transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
3	esv3387720	chr4:121808252-121810250	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121796400-121824400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr4:121796800-121808400	Weak transcription	Left Ventricle	heart
3	chr4:121797000-121823800	Weak transcription	Osteobl	bone
4	chr4:121798200-121842400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:121798800-121810600	Weak transcription	Fetal Intestine Small	intestine
6	chr4:121798800-121814000	Weak transcription	Fetal Intestine Large	intestine
7	chr4:121799200-121811200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:121801200-121814400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:121802200-121826600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr4:121802600-121813800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:121802800-121813800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr4:121803200-121813600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr4:121803400-121810800	Weak transcription	Fetal Muscle Leg	muscle
14	chr4:121803400-121813800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:121803400-121813800	Weak transcription	Pancreas	Pancrea
16	chr4:121803400-121822600	Weak transcription	Aorta	Aorta
17	chr4:121803400-121827400	Weak transcription	NHDF-Ad	bronchial
18	chr4:121804200-121822400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr4:121804800-121830200	Weak transcription	Fetal Heart	heart
20	chr4:121807400-121808400	Weak transcription	Fetal Lung	lung
21	chr4:121807400-121813800	Weak transcription	Ovary	ovary

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