Variant report

Variant	rs554910957
Chromosome Location	chr3:133014825-133014826
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004358	chr3:133014772-133025177	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv2760760	chr3:133014772-133025189	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133003400-133015400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:133009800-133015400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:133010400-133016600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr3:133010800-133015400	Enhancers	HUVEC	blood vessel
5	chr3:133012200-133015000	Enhancers	HSMM	muscle
6	chr3:133012200-133015400	Enhancers	Osteobl	bone
7	chr3:133012400-133015400	Weak transcription	Right Ventricle	heart
8	chr3:133012400-133015600	Enhancers	NH-A	brain
9	chr3:133012600-133015400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:133012800-133015400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr3:133013000-133015400	Weak transcription	Fetal Brain Female	brain
12	chr3:133013600-133016400	Enhancers	Fetal Lung	lung
13	chr3:133014000-133015000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:133014000-133015600	Enhancers	Left Ventricle	heart
15	chr3:133014000-133015600	Enhancers	Right Atrium	heart
16	chr3:133014000-133015800	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr3:133014000-133016000	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr3:133014000-133016200	Enhancers	HSMMtube	muscle
19	chr3:133014000-133017000	Enhancers	Ovary	ovary
20	chr3:133014200-133015000	Enhancers	Psoas Muscle	Psoas
21	chr3:133014200-133015400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr3:133014200-133016600	Enhancers	Brain Germinal Matrix	brain
23	chr3:133014200-133016600	Enhancers	Fetal Muscle Leg	muscle
24	chr3:133014400-133015400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr3:133014400-133015600	Enhancers	Adipose Nuclei	Adipose
26	chr3:133014400-133017000	Enhancers	Fetal Brain Male	brain
27	chr3:133014600-133015000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr3:133014600-133015600	Weak transcription	HMEC	breast
29	chr3:133014600-133019000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr3:133014800-133015200	Weak transcription	Fetal Stomach	stomach
31	chr3:133014800-133015200	Weak transcription	Rectal Smooth Muscle	rectum
32	chr3:133014800-133015200	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr3:133014800-133015400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr3:133014800-133015800	Enhancers	Muscle Satellite Cultured Cells	--
35	chr3:133014800-133016400	Enhancers	Fetal Heart	heart
36	chr3:133014800-133019800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr3:133014800-133019800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr3:133014800-133020800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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