Variant report

Variant	rs554915727
Chromosome Location	chr2:152618207-152618208
allele	-/AATA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:152614524..152619932-chr2:152620577..152626819,11	K562	blood:
2	chr2:152616288..152619244-chr2:152629461..152632128,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934136	chr2:152308156-152664443	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1005746	chr2:152361972-153059840	Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv535984	chr2:152361972-153059840	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	esv3414820	chr2:152616581-152618629	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2592137	chr2:152616645-152618365	Enhancers Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:152595800-152620200	Weak transcription	Primary B cells from cord blood	blood
2	chr2:152597200-152618400	Weak transcription	Aorta	Aorta
3	chr2:152598200-152618600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr2:152611000-152632400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:152611200-152620400	Weak transcription	Fetal Muscle Leg	muscle
6	chr2:152611600-152622600	Enhancers	K562	blood
7	chr2:152612000-152622200	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr2:152614600-152622000	Weak transcription	Fetal Lung	lung
9	chr2:152614600-152622200	Weak transcription	Left Ventricle	heart
10	chr2:152614600-152638000	Weak transcription	Pancreas	Pancrea
11	chr2:152615000-152622400	Weak transcription	Adipose Nuclei	Adipose
12	chr2:152615400-152622400	Weak transcription	Lung	lung
13	chr2:152615600-152623000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr2:152616200-152619200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr2:152616600-152620200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr2:152616800-152619800	Weak transcription	Placenta	Placenta
17	chr2:152616800-152621400	Weak transcription	Fetal Stomach	stomach
18	chr2:152616800-152622200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr2:152616800-152644400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr2:152616800-152662400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr2:152617000-152620400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr2:152617000-152622200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr2:152617000-152622400	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr2:152617000-152622400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr2:152617000-152623000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr2:152617000-152632600	Weak transcription	Brain Hippocampus Middle	brain
27	chr2:152617000-152638000	Weak transcription	Esophagus	oesophagus
28	chr2:152617000-152669400	Weak transcription	Gastric	stomach
29	chr2:152617200-152618800	Enhancers	HepG2	liver
30	chr2:152617200-152619200	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr2:152617200-152619600	Weak transcription	HSMMtube	muscle
32	chr2:152617200-152621200	Weak transcription	Primary T cells from cord blood	blood
33	chr2:152617200-152622200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr2:152617200-152622200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr2:152617200-152622200	Weak transcription	Right Atrium	heart
36	chr2:152617200-152622400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr2:152617200-152622400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr2:152617200-152622600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr2:152617200-152622800	Weak transcription	Brain Anterior Caudate	brain
40	chr2:152618000-152618600	Enhancers	Psoas Muscle	Psoas
41	chr2:152618000-152619400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr2:152618200-152622200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr2:152618200-152631200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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