Variant report

Variant	rs554966035
Chromosome Location	chr5:68390266-68390267
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:68388349..68391314-chr5:68786934..68789626,2	MCF-7	breast:
2	chr5:68389643..68390291-chr7:45025687..45026218,2	NB4	blood:
3	chr5:68388171..68390847-chr5:68662913..68666552,4	K562	blood:
4	chr5:68388706..68391393-chr5:68627238..68631529,6	MCF-7	breast:
5	chr5:68387785..68391337-chr5:68461261..68464730,5	K562	blood:
6	chr5:68388226..68392530-chr5:68662317..68667070,8	K562	blood:
7	chr5:68388860..68391967-chr5:68513712..68515652,4	K562	blood:
8	chr5:68387450..68391238-chr5:68664593..68668133,5	MCF-7	breast:
9	chr5:68388388..68391466-chr5:68512032..68515267,4	MCF-7	breast:
10	chr5:68337727..68340697-chr5:68388577..68391488,3	MCF-7	breast:
11	chr5:68389720..68391335-chr5:68512201..68513725,2	MCF-7	breast:
12	chr5:68388464..68391397-chr5:68483791..68487195,4	K562	blood:
13	chr5:68389331..68393521-chr5:68397846..68403936,9	K562	blood:
14	chr14:96968195..96968730-chr5:68389846..68390449,2	Hela-S3	cervix:
15	chr5:68388570..68392149-chr5:68396982..68399420,3	MCF-7	breast:
16	chr5:68388453..68391488-chr5:68483791..68487092,6	K562	blood:
17	chr5:68389777..68391751-chr5:68483907..68486743,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000260806	Chromatin interaction
ENSG00000232956	Chromatin interaction
ENSG00000085231	Chromatin interaction
ENSG00000134056	Chromatin interaction
ENSG00000152942	Chromatin interaction
ENSG00000153044	Chromatin interaction
ENSG00000215006	Chromatin interaction
ENSG00000197822	Chromatin interaction
ENSG00000090060	Chromatin interaction
ENSG00000183323	Chromatin interaction
ENSG00000134057	Chromatin interaction
ENSG00000250237	Chromatin interaction
ENSG00000145740	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018151	chr5:68377118-68667581	Enhancers Active TSS Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	esv3391099	chr5:68377245-68400350	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
3	nsv881765	chr5:68379836-68448694	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	esv3413325	chr5:68389021-68391569	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68389200-68390400	Active TSS	Skeletal Muscle Male	skeletal muscle
2	chr5:68389200-68390600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr5:68389200-68390800	Active TSS	Primary T helper cells PMA-I stimulated	--
4	chr5:68389400-68390400	Active TSS	Cortex derived primary cultured neurospheres	brain
5	chr5:68389400-68390400	Active TSS	Adipose Nuclei	Adipose
6	chr5:68389400-68390400	Active TSS	Brain Angular Gyrus	brain
7	chr5:68389400-68390400	Active TSS	Brain Anterior Caudate	brain
8	chr5:68389400-68390600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:68389400-68390600	Active TSS	Brain Cingulate Gyrus	brain
10	chr5:68389400-68390600	Active TSS	Brain Germinal Matrix	brain
11	chr5:68389400-68390600	Active TSS	Brain Hippocampus Middle	brain
12	chr5:68389400-68390600	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr5:68389400-68390600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr5:68389400-68390600	Active TSS	Brain Substantia Nigra	brain
15	chr5:68389400-68390600	Active TSS	Colon Smooth Muscle	Colon
16	chr5:68389400-68390600	Active TSS	Duodenum Mucosa	Duodenum
17	chr5:68389400-68390600	Active TSS	Fetal Lung	lung
18	chr5:68389400-68390600	Active TSS	Fetal Muscle Leg	muscle
19	chr5:68389400-68390600	Active TSS	Rectal Mucosa Donor 29	rectum
20	chr5:68389400-68390600	Active TSS	Rectal Mucosa Donor 31	rectum
21	chr5:68389400-68390600	Active TSS	Rectal Smooth Muscle	rectum
22	chr5:68389400-68390600	Active TSS	Osteobl	bone
23	chr5:68389400-68390800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:68389400-68390800	Active TSS	HUES6 Cell Line	embryonic stem cell
25	chr5:68389400-68390800	Active TSS	iPS-20b Cell Line	embryonic stem cell
26	chr5:68389400-68390800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr5:68389400-68390800	Active TSS	Duodenum Smooth Muscle	Duodenum
28	chr5:68389400-68390800	Active TSS	Fetal Brain Female	brain
29	chr5:68389400-68390800	Active TSS	Fetal Intestine Small	intestine
30	chr5:68389400-68390800	Active TSS	Fetal Kidney	kidney
31	chr5:68389400-68390800	Active TSS	Placenta	Placenta
32	chr5:68389400-68390800	Active TSS	Fetal Stomach	stomach
33	chr5:68389400-68390800	Active TSS	HSMMtube	muscle
34	chr5:68389400-68391000	Active TSS	H1 Cell Line	embryonic stem cell
35	chr5:68389400-68391000	Active TSS	iPS-18 Cell Line	embryonic stem cell
36	chr5:68389400-68391000	Active TSS	Muscle Satellite Cultured Cells	--
37	chr5:68389400-68391000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr5:68389400-68391000	Active TSS	Fetal Muscle Trunk	muscle
39	chr5:68389400-68391000	Active TSS	Ovary	ovary
40	chr5:68389400-68391000	Active TSS	Psoas Muscle	Psoas
41	chr5:68389400-68391000	Active TSS	Stomach Smooth Muscle	stomach
42	chr5:68389400-68391000	Active TSS	NHDF-Ad	bronchial
43	chr5:68389400-68391200	Active TSS	HUES48 Cell Line	embryonic stem cell
44	chr5:68389400-68391200	Active TSS	HUES64 Cell Line	embryonic stem cell
45	chr5:68389400-68391200	Active TSS	iPS-15b Cell Line	embryonic stem cell
46	chr5:68389400-68391200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr5:68389400-68391200	Active TSS	Breast Myoepithelial Primary Cells	Breast
48	chr5:68389400-68391200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr5:68389400-68391200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr5:68389400-68391200	Active TSS	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links