Variant report

Variant	rs554972709
Chromosome Location	chr9:103492241-103492242
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036417	chr9:103478028-103509840	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv6640	chr9:103490827-103535653	Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103490600-103493200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr9:103491600-103492400	Enhancers	Brain Hippocampus Middle	brain
3	chr9:103491600-103493000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr9:103491600-103493200	Enhancers	Brain Substantia Nigra	brain
5	chr9:103492000-103492800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr9:103492000-103493000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr9:103492200-103492600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr9:103492200-103492800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr9:103492200-103492800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr9:103492200-103493000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr9:103492200-103493000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links