Variant report

Variant	rs554982772
Chromosome Location	chr10:93166204-93166205
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040403	chr10:93165819-93225036	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93162400-93168800	Weak transcription	HSMM	muscle
2	chr10:93162800-93169000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:93163000-93167600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:93163000-93168400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:93163000-93168800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr10:93163600-93168400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:93164600-93166600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr10:93164600-93166600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr10:93164600-93166600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr10:93164800-93167000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr10:93164800-93167600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:93165000-93167400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:93165600-93167600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr10:93166200-93166400	Enhancers	H9 Cell Line	embryonic stem cell
15	chr10:93166200-93166400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr10:93166200-93167600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:93166200-93168600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr10:93166200-93168600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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