Variant report

Variant	rs555003910
Chromosome Location	chr20:52679283-52679284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:37)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:37 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:52573818..52574952-chr20:52679002..52679930,5	MCF-7	breast:
2	chr20:52212827..52216446-chr20:52677595..52681391,3	MCF-7	breast:
3	chr20:52676834..52679503-chr20:53266669..53268779,2	MCF-7	breast:
4	chr20:52604122..52604816-chr20:52679203..52679933,2	MCF-7	breast:
5	chr20:52365178..52367429-chr20:52678316..52680758,2	MCF-7	breast:
6	chr20:52678920..52679915-chr3:63978931..63979877,3	MCF-7	breast:
7	chr20:52531928..52532988-chr20:52679010..52679629,4	MCF-7	breast:
8	chr20:52239693..52240526-chr20:52678812..52679495,2	MCF-7	breast:
9	chr20:52659902..52660887-chr20:52678920..52680381,7	MCF-7	breast:
10	chr20:52679016..52679935-chr20:52814343..52815229,5	MCF-7	breast:
11	chr20:45986431..45988883-chr20:52677453..52680110,2	MCF-7	breast:
12	chr20:46415650..46418405-chr20:52679117..52680920,2	MCF-7	breast:
13	chr20:52679000..52679535-chr20:52692581..52693450,3	MCF-7	breast:
14	chr20:52195174..52196195-chr20:52679020..52679926,4	MCF-7	breast:
15	chr20:52677507..52680494-chr3:64381929..64383896,2	MCF-7	breast:
16	chr20:52573995..52574515-chr20:52679072..52679932,2	MCF-7	breast:
17	chr20:41005640..41008273-chr20:52676406..52679770,3	MCF-7	breast:
18	chr20:52674058..52677861-chr20:52678021..52680977,4	K562	blood:
19	chr20:52678948..52679961-chr20:53262987..53263883,4	MCF-7	breast:
20	chr20:49404461..49405308-chr20:52679057..52679572,2	MCF-7	breast:
21	chr20:52195073..52195979-chr20:52678957..52680236,7	MCF-7	breast:
22	chr20:52555638..52557146-chr20:52679031..52680345,11	MCF-7	breast:
23	chr20:52669724..52670230-chr20:52678961..52679874,2	MCF-7	breast:
24	chr20:52678982..52679558-chr20:52709556..52710359,2	MCF-7	breast:
25	chr20:52679231..52682277-chr20:52687139..52688972,3	K562	blood:
26	chr20:52678237..52680834-chr20:52687085..52688960,2	K562	blood:
27	chr20:52678959..52679775-chr20:52815946..52816831,2	MCF-7	breast:
28	chr20:52679054..52679922-chr20:52815868..52816606,3	MCF-7	breast:
29	chr20:52679100..52679888-chr20:52713261..52713868,2	MCF-7	breast:
30	chr20:52556238..52557068-chr20:52678971..52679960,5	MCF-7	breast:
31	chr20:46750253..46752428-chr20:52678041..52680092,2	MCF-7	breast:
32	chr20:52559378..52561018-chr20:52678965..52680200,31	MCF-7	breast:
33	chr20:52190970..52191876-chr20:52678761..52679613,2	MCF-7	breast:
34	chr20:52556569..52566193-chr20:52677353..52682397,12	MCF-7	breast:
35	chr20:52559216..52560998-chr20:52678738..52679912,14	MCF-7	breast:
36	chr20:52561105..52561751-chr20:52678984..52679783,3	MCF-7	breast:
37	chr20:52678972..52680191-chr20:55818951..55820251,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000064787	Chromatin interaction
ENSG00000101144	Chromatin interaction
ENSG00000236352	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34060	chr20:52251863-52702186	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	296 gene(s)	inside rSNPs	diseases
2	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
3	esv2756743	chr20:52679137-52685208	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region miRNA	20 gene(s)	inside rSNPs	diseases
4	esv2758801	chr20:52679137-52685208	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52645200-52682200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr20:52669400-52681800	Weak transcription	Gastric	stomach
3	chr20:52674400-52681200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr20:52674400-52682000	Weak transcription	Colonic Mucosa	Colon
5	chr20:52675000-52683000	Weak transcription	HepG2	liver
6	chr20:52675600-52679600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr20:52675800-52679600	Weak transcription	Primary B cells from peripheral blood	blood
8	chr20:52677200-52680000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr20:52677400-52680200	Enhancers	Stomach Mucosa	stomach
10	chr20:52677600-52679400	Enhancers	HSMM	muscle
11	chr20:52677600-52679400	Enhancers	NH-A	brain
12	chr20:52677600-52679400	Enhancers	Osteobl	bone
13	chr20:52677600-52679800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr20:52677600-52679800	Enhancers	HSMMtube	muscle
15	chr20:52677600-52679800	Enhancers	NHDF-Ad	bronchial
16	chr20:52677800-52679400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr20:52677800-52679800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr20:52677800-52679800	Enhancers	Brain Cingulate Gyrus	brain
19	chr20:52677800-52679800	Enhancers	Brain Substantia Nigra	brain
20	chr20:52677800-52680000	Enhancers	Adipose Nuclei	Adipose
21	chr20:52678000-52679800	Enhancers	Fetal Heart	heart
22	chr20:52678200-52680200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr20:52678200-52683800	Weak transcription	HMEC	breast
24	chr20:52678200-52684400	Weak transcription	Fetal Stomach	stomach
25	chr20:52678400-52683200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr20:52678800-52680000	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr20:52679000-52679800	Enhancers	Brain Angular Gyrus	brain
28	chr20:52679000-52679800	Enhancers	Brain Hippocampus Middle	brain
29	chr20:52679000-52679800	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr20:52679000-52680000	Enhancers	A549	lung
31	chr20:52679200-52679400	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr20:52679200-52679600	Enhancers	Brain Anterior Caudate	brain
33	chr20:52679200-52679800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr20:52679200-52679800	Enhancers	K562	blood
35	chr20:52679200-52680200	Enhancers	GM12878-XiMat	blood
36	chr20:52679200-52680800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr20:52679200-52681600	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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