Variant report

Variant	rs555024859
Chromosome Location	chr8:58094989-58094990
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:74)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:74 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr8:58094880-58095030	NHEK	skin:	n/a	n/a
2	CTCF	chr8:58094860-58095010	GM12875	blood:	n/a	n/a
3	CTCF	chr8:58094840-58094990	SAEC	small airway:	n/a	n/a
4	CTCF	chr8:58094840-58094990	GM12869	blood:	n/a	n/a
5	CTCF	chr8:58094840-58094990	HCT-116	colon:	n/a	n/a
6	CTCF	chr8:58094920-58095070	NB4	blood:	n/a	n/a
7	CTCF	chr8:58094715-58095113	MCF-7	breast:	n/a	n/a
8	CTCF	chr8:58094840-58094990	HPAF	blood vessel:	n/a	n/a
9	CTCF	chr8:58094860-58095010	HUVEC	blood vessel:	n/a	n/a
10	CTCF	chr8:58094860-58095010	GM12872	blood:	n/a	n/a
11	CTCF	chr8:58094880-58095030	GM12865	blood:	n/a	n/a
12	RAD21	chr8:58094727-58095186	MCF-7	breast:	n/a	n/a
13	CTCF	chr8:58094960-58095110	HVMF	connective:	n/a	n/a
14	CTCF	chr8:58094840-58094990	HRE	kidney:	n/a	n/a
15	CTCF	chr8:58094831-58095002	LNCaP	prostate:	n/a	n/a
16	SMC3	chr8:58094782-58095150	GM12878	blood:	n/a	n/a
17	SMC3	chr8:58094772-58095103	Hela-S3	cervix:	n/a	n/a
18	CTCF	chr8:58094880-58095030	GM12873	blood:	n/a	n/a
19	CTCF	chr8:58094860-58095010	HMEC	breast:	n/a	n/a
20	RAD21	chr8:58094814-58095048	GM12878	blood:	n/a	n/a
21	CTCF	chr8:58094880-58095030	BJ	skin:	n/a	n/a
22	CTCF	chr8:58094880-58095030	GM06990	blood:	n/a	n/a
23	SMC3	chr8:58094744-58095075	HepG2	liver:	n/a	n/a
24	CTCF	chr8:58094720-58095010	HVMF	connective:	n/a	n/a
25	FOXA1	chr8:58094713-58095088	T-47D	breast:	n/a	n/a
26	RAD21	chr8:58094849-58095049	HepG2	liver:	n/a	n/a
27	CTCF	chr8:58094880-58095030	Caco-2	colon:	n/a	n/a
28	CTCF	chr8:58094920-58095070	RPTEC	kidney:	n/a	n/a
29	RAD21	chr8:58094759-58095027	HepG2	liver:	n/a	n/a
30	RAD21	chr8:58094796-58095122	A549	lung:	n/a	n/a
31	CTCF	chr8:58094614-58095171	SK-N-SH	brain:	n/a	n/a
32	RAD21	chr8:58094775-58095104	Hela-S3	cervix:	n/a	n/a
33	CTCF	chr8:58094880-58095030	HEK293	kidney:	n/a	n/a
34	RAD21	chr8:58094835-58095132	ECC-1	luminal epithelium:	n/a	n/a
35	CTCF	chr8:58094796-58095074	K562	blood:	n/a	n/a
36	CTCF	chr8:58094819-58095044	GM12878	blood:	n/a	n/a
37	CTCF	chr8:58094860-58095010	AG10803	skin:	n/a	n/a
38	CTCF	chr8:58094860-58095010	HPAF	blood vessel:	n/a	n/a
39	RAD21	chr8:58094838-58095041	HCT-116	colon:	n/a	n/a
40	CTCF	chr8:58094900-58095050	HCM	heart:	n/a	n/a
41	CTCF	chr8:58094860-58095010	MCF-7	breast:	n/a	n/a
42	CTCF	chr8:58094875-58095005	GM10248	blood:	n/a	n/a
43	CTCF	chr8:58094811-58095028	Hela-S3	cervix:	n/a	n/a
44	RAD21	chr8:58094716-58095262	MCF-7	breast:	n/a	n/a
45	CTCF	chr8:58094840-58094990	A549	lung:	n/a	n/a
46	CTCF	chr8:58094840-58094990	AG09319	gingival:	n/a	n/a
47	RAD21	chr8:58094838-58095069	H1-hESC	embryonic stem cell:	n/a	n/a
48	CTCF	chr8:58094830-58095032	MCF-7	breast:	n/a	n/a
49	CTCF	chr8:58094716-58095111	MCF-7	breast:	n/a	n/a
50	ZNF143	chr8:58094810-58095030	GM12878	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:58094338..58095391-chr8:58255624..58256416,4	MCF-7	breast:
2	chr8:58094506..58095013-chr8:58135741..58136318,2	MCF-7	breast:
3	chr8:58094799..58095495-chr8:58255642..58256690,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000220984	TF binding region
ENSG00000253871	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027125	chr8:57891279-58095884	Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758161	chr8:57930392-58474449	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2759618	chr8:57930392-58474449	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv533217	chr8:57991065-58789001	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv890934	chr8:58037522-58112053	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv890935	chr8:58038406-58114743	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv12840	chr8:58046936-58196713	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv3693378	chr8:58051501-58128557	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv3432915	chr8:58055026-58271178	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	esv1793550	chr8:58063507-58215957	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	esv1804272	chr8:58063507-58215957	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	esv1814738	chr8:58063507-58215957	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv428200	chr8:58063507-58215957	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	esv1834359	chr8:58077247-58127527	ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	esv1837249	chr8:58077247-58130784	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv1034068	chr8:58078547-58161439	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
17	nsv1028917	chr8:58080796-58158408	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
18	esv10908	chr8:58085198-58134668	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
19	nsv831321	chr8:58086885-58237744	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
20	esv1816189	chr8:58093977-58126589	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
21	esv6590	chr8:58094861-58095017	Inactive region	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links