Variant report

Variant	rs555044998
Chromosome Location	chr3:140938559-140938560
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460870	chr3:140938546-141005574	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591892	chr3:140938546-141005574	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140931800-140941200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:140935800-140938800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr3:140936400-140940000	Enhancers	Fetal Heart	heart
4	chr3:140937200-140940600	Weak transcription	Right Atrium	heart
5	chr3:140937600-140938600	Weak transcription	Left Ventricle	heart
6	chr3:140937600-140946800	Weak transcription	Thymus	Thymus
7	chr3:140937800-140938800	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr3:140938000-140938600	Enhancers	Fetal Brain Male	brain
9	chr3:140938200-140940000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr3:140938400-140939000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:140938400-140939200	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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