Variant report

Variant	rs555047785
Chromosome Location	chr10:6243236-6243237
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:6243220-6243370	HRPEpiC	eye:	n/a	n/a
2	MXI1	chr10:6242644-6247076	SK-N-SH	brain:	n/a	n/a
3	HEY1	chr10:6242414-6245097	HepG2	liver:	n/a	chr10:6243015-6243030 chr10:6243778-6243793
4	MAX	chr10:6242660-6244139	HepG2	liver:	n/a	chr10:6243866-6243875
5	CTCF	chr10:6243200-6243350	HBMEC	blood vessel:	n/a	n/a
6	POLR2A	chr10:6243088-6243406	HepG2	liver:	n/a	n/a
7	MAX	chr10:6243008-6243436	ECC-1	luminal epithelium:	n/a	n/a
8	ZBTB7A	chr10:6242832-6243737	ECC-1	luminal epithelium:	n/a	n/a
9	MYC	chr10:6243153-6243371	NB4	blood:	n/a	n/a
10	USF2	chr10:6243235-6243286	GM12878	blood:	n/a	n/a
11	POLR2A	chr10:6242623-6243363	U87	brain:	n/a	n/a
12	MAX	chr10:6242532-6244027	GM12878	blood:	n/a	chr10:6243866-6243875
13	CHD2	chr10:6243149-6243349	H1-hESC	embryonic stem cell:	n/a	n/a
14	SMC3	chr10:6242512-6247173	SK-N-SH	brain:	n/a	chr10:6245922-6245932 chr10:6243015-6243025
15	MAZ	chr10:6242398-6243967	GM12878	blood:	n/a	chr10:6243866-6243875
16	MXI1	chr10:6243049-6244069	GM12878	blood:	n/a	n/a
17	POLR2A	chr10:6242428-6245381	U87	brain:	n/a	n/a
18	CTCF	chr10:6243140-6243290	Caco-2	colon:	n/a	n/a
19	POLR2A	chr10:6242869-6244029	H1-neurons	neurons:	n/a	n/a
20	SIN3A	chr10:6242710-6243261	H1-hESC	embryonic stem cell:	n/a	chr10:6243078-6243091
21	ZNF263	chr10:6242718-6243305	HEK293-T-REx	kidney:	n/a	n/a
22	CTCF	chr10:6243160-6243310	SK-N-SH_RA	brain:	n/a	n/a
23	MAX	chr10:6242769-6246556	A549	lung:	n/a	chr10:6244170-6244180 chr10:6243866-6243875 chr10:6244173-6244183
24	BHLHE40	chr10:6243093-6243952	GM12878	blood:	n/a	chr10:6243555-6243571
25	POLR2A	chr10:6242662-6243413	GM12878	blood:	n/a	n/a
26	POLR2A	chr10:6243102-6245702	HepG2	liver:	n/a	n/a
27	MAX	chr10:6242629-6244096	MCF-7	breast:	n/a	chr10:6243866-6243875
28	ELF1	chr10:6242643-6243379	GM12878	blood:	n/a	n/a
29	REST	chr10:6243109-6243335	HepG2	liver:	n/a	chr10:6243302-6243320
30	POLR2A	chr10:6242867-6243292	GM12878	blood:	n/a	n/a
31	MAX	chr10:6242672-6244023	HepG2	liver:	n/a	chr10:6243866-6243875
32	TBL1XR1	chr10:6243142-6243970	GM12878	blood:	n/a	n/a
33	POU2F2	chr10:6242729-6243420	GM12878	blood:	n/a	chr10:6243109-6243121
34	CTCF	chr10:6243200-6243350	HCPEpiC	choroid plexus:	n/a	n/a
35	E2F6	chr10:6243094-6243319	K562	blood:	n/a	chr10:6243128-6243140
36	MAX	chr10:6242859-6243423	ECC-1	luminal epithelium:	n/a	n/a
37	POLR2A	chr10:6242449-6247290	GM12878	blood:	n/a	n/a
38	MAX	chr10:6242960-6243405	H1-hESC	embryonic stem cell:	n/a	n/a
39	POLR2A	chr10:6242554-6243363	U87	brain:	n/a	n/a
40	RAD21	chr10:6243097-6243277	IMR90	lung:	n/a	chr10:6243221-6243231
41	MAZ	chr10:6243218-6243793	HepG2	liver:	n/a	n/a
42	POLR2A	chr10:6242617-6243968	A549	lung:	n/a	n/a
43	MAZ	chr10:6242545-6247296	IMR90	lung:	n/a	chr10:6244170-6244180 chr10:6243866-6243875 chr10:6244173-6244183
44	MAX	chr10:6243040-6243366	K562	blood:	n/a	n/a
45	POLR2A	chr10:6242566-6246082	Raji	blood:	n/a	n/a
46	POLR2A	chr10:6243109-6243298	IMR90	lung:	n/a	n/a
47	CHD2	chr10:6243189-6243424	HepG2	liver:	n/a	n/a
48	MAX	chr10:6242633-6247414	A549	lung:	n/a	chr10:6244170-6244180 chr10:6243866-6243875 chr10:6244173-6244183
49	CHD2	chr10:6242824-6245522	GM12878	blood:	n/a	n/a
50	PML	chr10:6242967-6243379	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:6129825..6133257-chr10:6241985..6247329,10	MCF-7	breast:
2	chr10:6183735..6189299-chr10:6241759..6246920,10	MCF-7	breast:
3	chr10:6193518..6195996-chr10:6241964..6244930,2	MCF-7	breast:
4	chr10:6152733..6154775-chr10:6241861..6244257,2	K562	blood:
5	chr10:6183938..6190482-chr10:6242008..6247032,17	MCF-7	breast:
6	chr10:6149065..6151002-chr10:6243111..6244731,2	K562	blood:
7	chr10:6137316..6139736-chr10:6243153..6245060,3	MCF-7	breast:
8	chr10:6239790..6243643-chr10:6244316..6247669,6	K562	blood:
9	chr10:6234379..6237357-chr10:6241010..6243643,2	K562	blood:
10	chr10:6149017..6157788-chr10:6241652..6246346,17	MCF-7	breast:
11	chr10:6242187..6248014-chr10:6262246..6271624,18	MCF-7	breast:
12	chr10:6128377..6132115-chr10:6241834..6247197,6	MCF-7	breast:
13	chr10:6149112..6154904-chr10:6241492..6247373,13	MCF-7	breast:
14	chr10:6242059..6244389-chr6:31867421..31869441,2	MCF-7	breast:
15	chr10:6242978..6244543-chr10:129751150..129752763,2	MCF-7	breast:
16	chr10:6242075..6244740-chr10:27530620..27532882,2	MCF-7	breast:
17	chr10:6237461..6239091-chr10:6241197..6244129,2	K562	blood:
18	chr10:6242739..6248482-chr10:6257769..6263853,7	MCF-7	breast:

Variant related genes	Relation type
PFKFB3	TF binding region
ENSG00000170525	Chromatin interaction
ENSG00000107897	Chromatin interaction
ENSG00000166278	Chromatin interaction
ENSG00000213994	Chromatin interaction
ENSG00000262412	Chromatin interaction
ENSG00000263628	Chromatin interaction
ENSG00000134453	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1040721	chr10:6155144-6322566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv540476	chr10:6155144-6322566	Genic enhancers Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv894817	chr10:6173416-6251252	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
6	nsv1041039	chr10:6217724-6354858	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	nsv894832	chr10:6237156-6253651	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv894833	chr10:6237156-6261704	Weak transcription Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
9	nsv894834	chr10:6237156-6272169	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
10	nsv521145	chr10:6241803-6246678	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
11	nsv894835	chr10:6242176-6268422	Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
12	esv3333968	chr10:6242696-6244844	Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6207000-6244400	Weak transcription	Hela-S3	cervix
2	chr10:6237600-6243600	Weak transcription	HSMMtube	muscle
3	chr10:6242200-6243600	Active TSS	Stomach Smooth Muscle	stomach
4	chr10:6242200-6244000	Enhancers	Fetal Heart	heart
5	chr10:6242400-6243400	Flanking Active TSS	Primary hematopoietic stem cells	blood
6	chr10:6242400-6243400	Flanking Active TSS	HUVEC	blood vessel
7	chr10:6242400-6244000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:6242400-6244600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
9	chr10:6242400-6244600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:6242400-6244800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:6242600-6243400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
12	chr10:6242600-6243400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
13	chr10:6242600-6243400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:6242600-6243400	Flanking Active TSS	Fetal Thymus	thymus
15	chr10:6242600-6243800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
16	chr10:6242600-6243800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
17	chr10:6242600-6243800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:6242600-6243800	Active TSS	Primary T helper naive cells from peripheral blood	blood
19	chr10:6242600-6243800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
20	chr10:6242600-6243800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
21	chr10:6242600-6243800	Active TSS	Brain Cingulate Gyrus	brain
22	chr10:6242600-6243800	Active TSS	Thymus	Thymus
23	chr10:6242600-6243800	Active TSS	GM12878-XiMat	blood
24	chr10:6242600-6244000	Active TSS	Brain Angular Gyrus	brain
25	chr10:6242600-6244000	Active TSS	Duodenum Smooth Muscle	Duodenum
26	chr10:6242600-6244000	Active TSS	Rectal Smooth Muscle	rectum
27	chr10:6242600-6244000	Active TSS	HepG2	liver
28	chr10:6242600-6244200	Active TSS	Brain Inferior Temporal Lobe	brain
29	chr10:6242600-6244600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
30	chr10:6242600-6244600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
31	chr10:6242600-6244800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
32	chr10:6242600-6244800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
33	chr10:6242600-6246400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr10:6242800-6243400	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr10:6242800-6243400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
36	chr10:6242800-6243400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
37	chr10:6242800-6243400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr10:6242800-6243400	Flanking Active TSS	Liver	Liver
39	chr10:6242800-6243400	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
40	chr10:6242800-6243400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
41	chr10:6242800-6243400	Flanking Active TSS	Fetal Muscle Leg	muscle
42	chr10:6242800-6243400	Flanking Bivalent TSS/Enh	Placenta	Placenta
43	chr10:6242800-6243600	Active TSS	Small Intestine	intestine
44	chr10:6242800-6243800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
45	chr10:6242800-6243800	Active TSS	Primary T killer memory cells from peripheral blood	blood
46	chr10:6242800-6243800	Active TSS	NHDF-Ad	bronchial
47	chr10:6242800-6244000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr10:6242800-6244000	Active TSS	Brain Anterior Caudate	brain
49	chr10:6242800-6244000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
50	chr10:6242800-6244000	Active TSS	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links