Variant report

Variant	rs555102627
Chromosome Location	chr7:26437656-26437657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F6	chr7:26437596-26438809	K562	blood:	n/a	n/a
2	MYC	chr7:26437596-26439124	NB4	blood:	n/a	chr7:26437959-26437969 chr7:26437752-26437761
3	GATA2	chr7:26437331-26439435	SH-SY5Y	brain:	n/a	chr7:26437759-26437767
4	MAX	chr7:26437489-26438108	H1-hESC	embryonic stem cell:	n/a	chr7:26437959-26437969 chr7:26437752-26437761
5	CTCF	chr7:26437640-26437790	HRPEpiC	eye:	n/a	n/a
6	MAX	chr7:26437585-26439122	K562	blood:	n/a	chr7:26437959-26437969 chr7:26437752-26437761
7	MAX	chr7:26437493-26439166	K562	blood:	n/a	chr7:26437959-26437969 chr7:26437752-26437761
8	ELF1	chr7:26437502-26439142	GM12878	blood:	n/a	chr7:26437841-26437853
9	MAX	chr7:26437509-26438036	H1-hESC	embryonic stem cell:	n/a	chr7:26437959-26437969 chr7:26437752-26437761
10	MYC	chr7:26437454-26439222	K562	blood:	n/a	chr7:26437959-26437969 chr7:26437752-26437761
11	YY1	chr7:26437634-26439040	GM12878	blood:	n/a	chr7:26438684-26438693 chr7:26437841-26437855
12	CTCF	chr7:26437560-26437710	GM12864	blood:	n/a	n/a
13	E2F6	chr7:26437470-26439230	H1-hESC	embryonic stem cell:	n/a	n/a
14	POLR2A	chr7:26437571-26439406	HUVEC	blood vessel:	n/a	n/a
15	POLR2A	chr7:26437618-26439118	GM19099	blood:	n/a	n/a
16	RCOR1	chr7:26437517-26439173	K562	blood:	n/a	n/a
17	PML	chr7:26437402-26439224	GM12878	blood:	n/a	n/a
18	POLR2A	chr7:26437571-26438893	GM12878	blood:	n/a	n/a
19	POLR2A	chr7:26437588-26438986	GM12878	blood:	n/a	n/a
20	POLR2A	chr7:26437495-26439143	H1-hESC	embryonic stem cell:	n/a	n/a
21	POLR2A	chr7:26437499-26438974	Raji	blood:	n/a	n/a
22	RUNX3	chr7:26437541-26439267	GM12878	blood:	n/a	n/a
23	MAX	chr7:26437640-26437895	K562	blood:	n/a	chr7:26437752-26437761
24	POLR2A	chr7:26437438-26439240	H1-neurons	neurons:	n/a	n/a
25	MYC	chr7:26437565-26439089	K562	blood:	n/a	chr7:26437959-26437969 chr7:26437752-26437761
26	POLR2A	chr7:26437597-26439083	NB4	blood:	n/a	n/a
27	POLR2A	chr7:26437464-26438904	GM12891	blood:	n/a	n/a
28	POLR2A	chr7:26437579-26439086	GM19193	blood:	n/a	n/a
29	ZBTB7A	chr7:26437653-26438358	K562	blood:	n/a	n/a
30	CTCF	chr7:26437620-26437770	GM12865	blood:	n/a	n/a
31	POLR2A	chr7:26437464-26438877	GM18505	blood:	n/a	n/a
32	POLR2A	chr7:26437623-26439014	GM15510	blood:	n/a	n/a
33	CTCF	chr7:26437640-26437790	HBMEC	blood vessel:	n/a	n/a
34	POLR2A	chr7:26437538-26438994	GM12892	blood:	n/a	n/a
35	MAX	chr7:26437641-26439104	GM12878	blood:	n/a	chr7:26437959-26437969 chr7:26437752-26437761
36	MAX	chr7:26437532-26438032	HepG2	liver:	n/a	chr7:26437959-26437969 chr7:26437752-26437761
37	POLR2A	chr7:26437468-26438216	GM12891	blood:	n/a	n/a
38	HDAC2	chr7:26437643-26438290	MCF-7	breast:	n/a	n/a
39	GATA3	chr7:26437294-26437750	T-47D	breast:	n/a	n/a
40	ZNF143	chr7:26437654-26437802	GM12878	blood:	n/a	n/a
41	GATA3	chr7:26437316-26438380	T-47D	breast:	n/a	chr7:26437759-26437767
42	POLR2A	chr7:26437584-26439005	GM12878	blood:	n/a	n/a
43	MAX	chr7:26437467-26439216	A549	lung:	n/a	chr7:26437959-26437969 chr7:26437752-26437761
44	E2F6	chr7:26437584-26439123	K562	blood:	n/a	n/a
45	SMC3	chr7:26437303-26439673	SK-N-SH	brain:	n/a	chr7:26437938-26437952 chr7:26437938-26437946
46	CTCF	chr7:26437640-26437790	GM12866	blood:	n/a	n/a
47	MAX	chr7:26437528-26438277	MCF-7	breast:	n/a	chr7:26437959-26437969 chr7:26437752-26437761
48	MAX	chr7:26437408-26439277	A549	lung:	n/a	chr7:26437959-26437969 chr7:26437752-26437761
49	MAZ	chr7:26437632-26439175	K562	blood:	n/a	chr7:26437959-26437969 chr7:26437752-26437761
50	RAD21	chr7:26437349-26439982	SK-N-SH	brain:	n/a	chr7:26437850-26437863

Variant related genes	Relation type
ENSG00000214870	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	esv3374116	chr7:26436952-26439800	Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26436000-26438600	Enhancers	Fetal Brain Male	brain
2	chr7:26436600-26437800	Enhancers	Spleen	Spleen
3	chr7:26437000-26437800	Bivalent/Poised TSS	Primary T cells from cord blood	blood
4	chr7:26437000-26438000	Enhancers	Fetal Heart	heart
5	chr7:26437200-26439400	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr7:26437400-26437800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
7	chr7:26437400-26437800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr7:26437400-26437800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr7:26437400-26437800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
10	chr7:26437400-26437800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
11	chr7:26437400-26437800	Flanking Active TSS	Brain Germinal Matrix	brain
12	chr7:26437400-26437800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr7:26437400-26437800	Flanking Active TSS	Colon Smooth Muscle	Colon
14	chr7:26437400-26437800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
15	chr7:26437400-26437800	Flanking Active TSS	Fetal Intestine Large	intestine
16	chr7:26437400-26437800	Flanking Active TSS	Fetal Kidney	kidney
17	chr7:26437400-26437800	Flanking Active TSS	Fetal Lung	lung
18	chr7:26437400-26437800	Flanking Active TSS	Fetal Stomach	stomach
19	chr7:26437400-26437800	Flanking Active TSS	Right Atrium	heart
20	chr7:26437400-26437800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
21	chr7:26437400-26437800	Flanking Bivalent TSS/Enh	HepG2	liver
22	chr7:26437400-26437800	Flanking Active TSS	K562	blood
23	chr7:26437400-26438000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr7:26437400-26438000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr7:26437400-26438000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr7:26437400-26438000	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
27	chr7:26437400-26438000	Flanking Active TSS	Adipose Nuclei	Adipose
28	chr7:26437400-26438000	Flanking Bivalent TSS/Enh	Brain Inferior Temporal Lobe	brain
29	chr7:26437400-26438000	Flanking Active TSS	Colonic Mucosa	Colon
30	chr7:26437400-26438000	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
31	chr7:26437400-26438000	Flanking Active TSS	Fetal Muscle Trunk	muscle
32	chr7:26437400-26438000	Flanking Active TSS	Fetal Muscle Leg	muscle
33	chr7:26437400-26438000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
34	chr7:26437400-26438000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
35	chr7:26437400-26438000	Flanking Active TSS	GM12878-XiMat	blood
36	chr7:26437400-26438000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
37	chr7:26437400-26438200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
38	chr7:26437400-26438200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr7:26437400-26438200	Flanking Active TSS	Stomach Smooth Muscle	stomach
40	chr7:26437400-26438400	Flanking Active TSS	Primary B cells from cord blood	blood
41	chr7:26437400-26438600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr7:26437400-26438600	Active TSS	Osteobl	bone
43	chr7:26437400-26438800	Active TSS	HUES48 Cell Line	embryonic stem cell
44	chr7:26437400-26439000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
45	chr7:26437400-26439000	Active TSS	Psoas Muscle	Psoas
46	chr7:26437400-26439400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr7:26437400-26439600	Active TSS	Pancreatic Islets	Pancreatic Islet
48	chr7:26437600-26437800	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr7:26437600-26437800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
50	chr7:26437600-26437800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood

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