Variant report

Variant	rs555126077
Chromosome Location	chr4:85072853-85072854
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:74)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:74 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr4:85072756-85073041	SK-N-SH_RA	brain:	n/a	n/a
2	FOXA1	chr4:85072794-85073050	T-47D	breast:	n/a	n/a
3	CTCF	chr4:85072820-85072970	WERI-Rb-1	eye:	n/a	n/a
4	RAD21	chr4:85072694-85073139	H1-hESC	embryonic stem cell:	n/a	n/a
5	CTCF	chr4:85072820-85072970	HCT-116	colon:	n/a	n/a
6	CTCF	chr4:85072760-85073050	HMEC	breast:	n/a	n/a
7	CTCF	chr4:85072792-85073042	LNCaP	prostate:	n/a	n/a
8	CTCF	chr4:85072820-85072970	HEEpiC	esophagus:	n/a	n/a
9	CTCF	chr4:85072788-85073044	MCF-7	breast:	n/a	n/a
10	CTCF	chr4:85072841-85072993	HepG2	liver:	n/a	n/a
11	CTCF	chr4:85072679-85073068	HCT-116	colon:	n/a	n/a
12	CTCF	chr4:85072820-85072970	GM12872	blood:	n/a	n/a
13	CTCF	chr4:85072820-85072970	GM12865	blood:	n/a	n/a
14	GATA3	chr4:85072554-85072997	T-47D	breast:	n/a	n/a
15	RAD21	chr4:85072649-85073157	MCF-7	breast:	n/a	n/a
16	CTCF	chr4:85072840-85072990	MCF-7	breast:	n/a	n/a
17	CTCF	chr4:85072780-85072930	GM12872	blood:	n/a	n/a
18	CTCF	chr4:85072832-85072996	Gliobla	brain:	n/a	n/a
19	CTCF	chr4:85072840-85072990	HAc	cerebellar:	n/a	n/a
20	CTCF	chr4:85072798-85073026	MCF-7	breast:	n/a	n/a
21	CTCF	chr4:85072840-85072990	GM12869	blood:	n/a	n/a
22	RAD21	chr4:85072715-85073181	HCT-116	colon:	n/a	n/a
23	CTCF	chr4:85072818-85072983	A549	lung:	n/a	n/a
24	CTCF	chr4:85072840-85072990	GM06990	blood:	n/a	n/a
25	CTCF	chr4:85072679-85073170	MCF-7	breast:	n/a	n/a
26	CTCF	chr4:85072820-85072970	HBMEC	blood vessel:	n/a	n/a
27	CTCF	chr4:85072720-85072870	BE2_C	brain:	n/a	n/a
28	CTCF	chr4:85072820-85072970	GM12874	blood:	n/a	n/a
29	CTCF	chr4:85072820-85072970	GM12864	blood:	n/a	n/a
30	CTCF	chr4:85072800-85072950	GM12875	blood:	n/a	n/a
31	CTCF	chr4:85072800-85072950	MCF-7	breast:	n/a	n/a
32	RAD21	chr4:85072740-85073046	HepG2	liver:	n/a	n/a
33	CTCF	chr4:85072800-85072950	SK-N-SH_RA	brain:	n/a	n/a
34	CTCF	chr4:85072821-85072973	MCF-7	breast:	n/a	n/a
35	CTCF	chr4:85072821-85072995	NHEK	skin:	n/a	n/a
36	CTCF	chr4:85072820-85072970	GM12873	blood:	n/a	n/a
37	CTCF	chr4:85072840-85072990	HepG2	liver:	n/a	n/a
38	CTCF	chr4:85072806-85072986	MCF-7	breast:	n/a	n/a
39	CTCF	chr4:85072829-85072988	A549	lung:	n/a	n/a
40	CTCF	chr4:85072817-85072992	MCF-7	breast:	n/a	n/a
41	CTCF	chr4:85072780-85072930	GM12865	blood:	n/a	n/a
42	CTCF	chr4:85072845-85072975	GM12892	blood:	n/a	n/a
43	CTCF	chr4:85072822-85073017	Medullo	brain:	n/a	n/a
44	CTCF	chr4:85072840-85072990	NHEK	skin:	n/a	n/a
45	CTCF	chr4:85072789-85073087	K562	blood:	n/a	n/a
46	CTCF	chr4:85072800-85072950	Caco-2	colon:	n/a	n/a
47	RAD21	chr4:85072614-85073202	MCF-7	breast:	n/a	n/a
48	CTCF	chr4:85072842-85073018	K562	blood:	n/a	n/a
49	SMC3	chr4:85072848-85073098	Hela-S3	cervix:	n/a	n/a
50	CTCF	chr4:85072828-85073017	GM12878	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:85072631..85073368-chr4:85450368..85450912,2	MCF-7	breast:
2	chr4:85071031..85073190-chr4:85079864..85082804,2	MCF-7	breast:
3	chr4:85072451..85073423-chr4:85180134..85180901,4	MCF-7	breast:
4	chr4:85072431..85073209-chr4:85424476..85425190,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000250546	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879512	chr4:84374692-85090749	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv916422	chr4:84965304-85145657	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv524354	chr4:85006975-85215142	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv829996	chr4:85016673-85173300	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv508294	chr4:85035979-85073816	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv879514	chr4:85057124-85272572	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv1012379	chr4:85071268-85205732	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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