Variant report

Variant	rs555173212
Chromosome Location	chr3:49587463-49587464
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834687	chr3:49448632-49631788	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv3369484	chr3:49586448-49590446	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49585200-49590600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:49585400-49590600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr3:49585800-49590400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:49586000-49590800	Weak transcription	Right Ventricle	heart
5	chr3:49587400-49588200	Enhancers	HUVEC	blood vessel
6	chr3:49587400-49589800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:49587400-49590600	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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