Variant report

Variant	rs555177568
Chromosome Location	chr1:178995114-178995115
allele	-/GC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:178994647..178996585-chr1:179051040..179053373,3	MCF-7	breast:
2	chr1:178994809..178995971-chr5:179049840..179051236,5	Hela-S3	cervix:
3	chr1:178994037..178996559-chr6:26216842..26218993,2	MCF-7	breast:
4	chr1:178510389..178513760-chr1:178993228..178995789,4	MCF-7	breast:
5	chr1:68962351..68962919-chr1:178994803..178995407,2	Hela-S3	cervix:
6	chr1:178995001..178995511-chr2:85766102..85766908,2	Hela-S3	cervix:
7	chr1:178994859..178995500-chr17:56084039..56084675,2	Hela-S3	cervix:
8	chr1:178993182..178999783-chr1:179045102..179052535,14	MCF-7	breast:
9	chr1:178995068..178997335-chr1:179038354..179040451,4	K562	blood:
10	chr1:178693031..178696022-chr1:178993845..178996341,3	MCF-7	breast:
11	chr1:178994916..178995510-chr8:37619961..37620638,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000273062	Chromatin interaction
ENSG00000169045	Chromatin interaction
ENSG00000186283	Chromatin interaction
ENSG00000213057	Chromatin interaction
ENSG00000234264	Chromatin interaction
ENSG00000168906	Chromatin interaction
ENSG00000184909	Chromatin interaction
ENSG00000168274	Chromatin interaction
ENSG00000147471	Chromatin interaction
ENSG00000136450	Chromatin interaction
ENSG00000187990	Chromatin interaction
ENSG00000116191	Chromatin interaction
ENSG00000024526	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3420967	chr1:178993954-178996502	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
2	esv3396952	chr1:178994279-178996377	Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:178994000-178996200	Active TSS	iPS-20b Cell Line	embryonic stem cell
2	chr1:178994000-178996400	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr1:178994200-178995400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr1:178994200-178996000	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr1:178994200-178996000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:178994200-178996000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:178994200-178996000	Active TSS	Brain Hippocampus Middle	brain
8	chr1:178994200-178996000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:178994200-178996000	Active TSS	Rectal Smooth Muscle	rectum
10	chr1:178994200-178996200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr1:178994200-178996200	Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr1:178994200-178996200	Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr1:178994200-178996200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr1:178994200-178996200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr1:178994200-178996200	Active TSS	Fetal Lung	lung
16	chr1:178994200-178996200	Active TSS	Stomach Smooth Muscle	stomach
17	chr1:178994200-178996400	Active TSS	H9 Cell Line	embryonic stem cell
18	chr1:178994200-178996400	Active TSS	Aorta	Aorta
19	chr1:178994200-178996600	Active TSS	Colonic Mucosa	Colon
20	chr1:178994200-178996800	Active TSS	Psoas Muscle	Psoas
21	chr1:178994200-178996800	Active TSS	NHDF-Ad	bronchial
22	chr1:178994400-178995600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
23	chr1:178994400-178996000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr1:178994400-178996000	Active TSS	Primary T cells from cord blood	blood
25	chr1:178994400-178996000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr1:178994400-178996000	Active TSS	Brain Angular Gyrus	brain
27	chr1:178994400-178996000	Active TSS	Brain Anterior Caudate	brain
28	chr1:178994400-178996000	Active TSS	Brain Inferior Temporal Lobe	brain
29	chr1:178994400-178996000	Active TSS	Fetal Kidney	kidney
30	chr1:178994400-178996200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr1:178994400-178996200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr1:178994400-178996200	Active TSS	Muscle Satellite Cultured Cells	--
33	chr1:178994400-178996200	Active TSS	Gastric	stomach
34	chr1:178994400-178996200	Active TSS	Left Ventricle	heart
35	chr1:178994400-178996200	Active TSS	Lung	lung
36	chr1:178994400-178996200	Active TSS	Pancreas	Pancrea
37	chr1:178994400-178996200	Active TSS	NHEK	skin
38	chr1:178994400-178996400	Active TSS	ES-I3 Cell Line	embryonic stem cell
39	chr1:178994400-178996400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
40	chr1:178994400-178996400	Active TSS	iPS-15b Cell Line	embryonic stem cell
41	chr1:178994400-178996400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr1:178994400-178996400	Active TSS	Breast Myoepithelial Primary Cells	Breast
43	chr1:178994400-178996400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr1:178994400-178996400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr1:178994400-178996400	Active TSS	Pancreatic Islets	Pancreatic Islet
46	chr1:178994400-178996600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr1:178994400-178996600	Active TSS	Ovary	ovary
48	chr1:178994400-178996800	Active TSS	Right Ventricle	heart
49	chr1:178994400-178997000	Active TSS	HMEC	breast
50	chr1:178994600-178995200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin

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