Variant report

Variant	rs555191698
Chromosome Location	chr6:11710775-11710776
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11710372..11713269-chr6:11723329..11725416,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428470	chr6:11686198-11747850	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv462637	chr6:11710554-11733777	Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv600990	chr6:11710554-11733777	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11688800-11711000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:11701800-11713000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:11703200-11711200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:11703200-11711400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:11703200-11711400	Weak transcription	HSMM	muscle
6	chr6:11703600-11712600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:11703800-11711200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:11704200-11714800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:11705800-11712000	Weak transcription	Adipose Nuclei	Adipose
10	chr6:11706600-11712000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:11707200-11711600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:11708000-11710800	Enhancers	Fetal Muscle Leg	muscle
13	chr6:11708200-11714800	Enhancers	Primary T cells fromperipheralblood	blood
14	chr6:11708400-11716800	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr6:11709000-11711200	Weak transcription	Psoas Muscle	Psoas
16	chr6:11709000-11714800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:11709000-11715800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr6:11709000-11716400	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr6:11709200-11710800	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr6:11709800-11711200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr6:11709800-11716400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr6:11710000-11711200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr6:11710000-11711200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:11710000-11711600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
25	chr6:11710000-11712200	Enhancers	Fetal Stomach	stomach
26	chr6:11710000-11715200	Enhancers	Fetal Thymus	thymus
27	chr6:11710200-11711800	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr6:11710400-11710800	Enhancers	Stomach Smooth Muscle	stomach
29	chr6:11710400-11710800	Flanking Active TSS	GM12878-XiMat	blood
30	chr6:11710400-11711000	Enhancers	Fetal Brain Female	brain
31	chr6:11710400-11711000	Enhancers	HSMMtube	muscle
32	chr6:11710400-11711200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr6:11710400-11711200	Enhancers	Brain Cingulate Gyrus	brain
34	chr6:11710400-11711400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr6:11710400-11711400	Enhancers	Duodenum Smooth Muscle	Duodenum
36	chr6:11710400-11711400	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr6:11710400-11711600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
38	chr6:11710400-11711800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
39	chr6:11710400-11711800	Enhancers	Fetal Heart	heart
40	chr6:11710400-11711800	Enhancers	Fetal Kidney	kidney
41	chr6:11710400-11712200	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr6:11710400-11712800	Enhancers	NHEK	skin
43	chr6:11710400-11713200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr6:11710400-11713400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:11710400-11713400	Enhancers	Spleen	Spleen
46	chr6:11710400-11713600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr6:11710600-11710800	Enhancers	Fetal Muscle Trunk	muscle
48	chr6:11710600-11710800	Enhancers	Gastric	stomach
49	chr6:11710600-11711000	Enhancers	Primary B cells from cord blood	blood
50	chr6:11710600-11711000	Flanking Active TSS	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links