Variant report

Variant	rs555271582
Chromosome Location	chr21:16624910-16624911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv442490	chr21:16624406-16628657	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16616200-16626200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr21:16621000-16628200	Weak transcription	HepG2	liver
3	chr21:16622800-16625200	Enhancers	HSMM	muscle
4	chr21:16623400-16625200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr21:16623400-16625600	Enhancers	Primary hematopoietic stem cells	blood
6	chr21:16623800-16630000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr21:16624000-16625600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr21:16624000-16625600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr21:16624200-16625600	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr21:16624200-16625600	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr21:16624400-16625400	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr21:16624800-16630000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links