Variant report

Variant	rs555272598
Chromosome Location	chr4:10459589-10459590
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	UBTF	chr4:10458839-10460197	K562	blood:	n/a	n/a
2	BHLHE40	chr4:10459217-10460106	K562	blood:	n/a	n/a
3	MAX	chr4:10457933-10460233	K562	blood:	n/a	chr4:10458720-10458729 chr4:10459964-10459974
4	ZMIZ1	chr4:10459302-10459678	K562	blood:	n/a	n/a
5	HCFC1	chr4:10459508-10460158	K562	blood:	n/a	n/a
6	JUND	chr4:10459488-10460190	K562	blood:	n/a	n/a
7	POLR2A	chr4:10458806-10459784	K562	blood:	n/a	n/a
8	WRNIP1	chr4:10459413-10459617	GM12878	blood:	n/a	n/a
9	SETDB1	chr4:10458972-10459746	U2OS	brain:	n/a	chr4:10459062-10459071
10	RCOR1	chr4:10458894-10460163	K562	blood:	n/a	n/a
11	MEF2A	chr4:10459589-10459923	K562	blood:	n/a	chr4:10459719-10459733 chr4:10459718-10459733
12	CCNT2	chr4:10459488-10460006	K562	blood:	n/a	chr4:10459969-10459978
13	POLR2A	chr4:10457977-10460336	K562	blood:	n/a	n/a
14	E2F6	chr4:10458047-10460188	K562	blood:	n/a	chr4:10458681-10458691 chr4:10459082-10459091 chr4:10459969-10459978 chr4:10458501-10458513 chr4:10459963-10459972 chr4:10458501-10458510 chr4:10459309-10459319 chr4:10459062-10459071 chr4:10458090-10458099 chr4:10459129-10459138 chr4:10458680-10458691
15	TBP	chr4:10458876-10459611	K562	blood:	n/a	n/a
16	POLR2A	chr4:10458768-10460210	K562	blood:	n/a	n/a
17	POLR2A	chr4:10458087-10460407	K562	blood:	n/a	n/a
18	MTA3	chr4:10459008-10459661	GM12878	blood:	n/a	n/a
19	MAZ	chr4:10458846-10460120	K562	blood:	n/a	chr4:10459964-10459974
20	POLR2A	chr4:10449651-10461479	K562	blood:	n/a	n/a
21	POLR2A	chr4:10458344-10460267	K562	blood:	n/a	n/a
22	YY1	chr4:10459520-10459772	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr4:10186685..10189037-chr4:10459555..10461188,2	K562	blood:
2	chr4:10117460..10124392-chr4:10456675..10465032,17	K562	blood:
3	chr4:10114078..10122203-chr4:10455501..10461954,12	K562	blood:

Variant related genes	Relation type
ZNF518B	TF binding region
ENSG00000223086	Chromatin interaction
ENSG00000071127	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997941	chr4:9805223-10493388	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
2	nsv1008649	chr4:9805223-10589802	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
3	nsv1000587	chr4:9805223-10610752	Flanking Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
4	nsv537022	chr4:9805223-10610752	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
5	nsv1003454	chr4:9805223-10710990	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
6	nsv537023	chr4:9805223-10710990	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
7	nsv1004801	chr4:9814720-10674528	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
8	nsv537024	chr4:9814720-10674528	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
9	nsv931483	chr4:9814721-10716463	Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
10	nsv1009972	chr4:9903566-10710990	Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
11	nsv537027	chr4:9903566-10710990	Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
12	nsv1010620	chr4:9937123-10686682	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
13	nsv530280	chr4:9947818-10940041	Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
14	nsv869057	chr4:10013411-10875454	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
15	nsv997936	chr4:10040713-11009045	Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
16	nsv1000177	chr4:10212245-10557776	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
17	nsv537037	chr4:10212245-10557776	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
18	nsv829858	chr4:10300236-10492716	Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
19	esv2757921	chr4:10343699-10545800	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
20	esv2759223	chr4:10343699-10545800	Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
21	nsv593727	chr4:10397327-10694991	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
22	nsv517971	chr4:10399068-10893253	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
23	nsv878694	chr4:10407572-10783606	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
24	esv1811736	chr4:10454409-10467939	Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
25	esv3327627	chr4:10457679-10460227	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
26	esv3524208	chr4:10457904-10460002	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
27	esv3524209	chr4:10457904-10460002	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:10457600-10459600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr4:10457600-10459600	Active TSS	Brain Inferior Temporal Lobe	brain
3	chr4:10457600-10459600	Active TSS	Fetal Kidney	kidney
4	chr4:10457600-10459600	Active TSS	Rectal Mucosa Donor 29	rectum
5	chr4:10457600-10460000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
6	chr4:10457800-10459600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr4:10457800-10459600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:10457800-10459600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr4:10457800-10459600	Active TSS	A549	lung
10	chr4:10457800-10459600	Active TSS	HSMM	muscle
11	chr4:10457800-10459600	Active TSS	HSMMtube	muscle
12	chr4:10458000-10459600	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr4:10458000-10459800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
14	chr4:10458000-10459800	Active TSS	Fetal Lung	lung
15	chr4:10458200-10459600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr4:10458200-10459600	Active TSS	Small Intestine	intestine
17	chr4:10458200-10459600	Active TSS	Osteobl	bone
18	chr4:10458200-10459800	Active TSS	Colon Smooth Muscle	Colon
19	chr4:10458400-10459600	Active TSS	Brain Germinal Matrix	brain
20	chr4:10458400-10459600	Active TSS	Ovary	ovary
21	chr4:10458400-10459600	Active TSS	NH-A	brain
22	chr4:10458400-10460000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr4:10458600-10460000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr4:10459000-10459600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
25	chr4:10459000-10459800	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
26	chr4:10459200-10459600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
27	chr4:10459200-10459600	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr4:10459200-10459600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr4:10459200-10459600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
30	chr4:10459200-10459600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
31	chr4:10459200-10459600	Flanking Active TSS	Primary B cells from peripheral blood	blood
32	chr4:10459200-10459600	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
33	chr4:10459200-10459600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
34	chr4:10459200-10459600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
35	chr4:10459200-10459600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
36	chr4:10459200-10459600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
37	chr4:10459200-10459600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
38	chr4:10459200-10459600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
39	chr4:10459200-10459600	Flanking Bivalent TSS/Enh	Primary Natural Killer cells fromperipheralblood	blood
40	chr4:10459200-10459600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
41	chr4:10459200-10459600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
42	chr4:10459200-10459600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr4:10459200-10459600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
44	chr4:10459200-10459600	Flanking Bivalent TSS/Enh	Brain Anterior Caudate	brain
45	chr4:10459200-10459600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
46	chr4:10459200-10459600	Flanking Bivalent TSS/Enh	Esophagus	oesophagus
47	chr4:10459200-10459600	Flanking Active TSS	Fetal Brain Male	brain
48	chr4:10459200-10459600	Flanking Active TSS	Fetal Brain Female	brain
49	chr4:10459200-10459600	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
50	chr4:10459200-10459600	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine

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