Variant report

Variant	rs555329006
Chromosome Location	chr6:27156829-27156830
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:25)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:25 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27155406..27158362-chr6:27858378..27860998,5	K562	blood:
2	chr6:27155655..27157705-chr6:27862759..27864468,2	K562	blood:
3	chr6:27148219..27154668-chr6:27154722..27158254,9	K562	blood:
4	chr6:27145218..27148337-chr6:27151646..27158450,9	MCF-7	breast:
5	chr6:27154554..27158026-chr6:27757603..27761465,4	K562	blood:
6	chr6:27156508..27159438-chr6:27571250..27573740,2	K562	blood:
7	chr6:27155042..27157581-chr6:27762343..27765282,2	K562	blood:
8	chr6:27153641..27158263-chr6:27858563..27861801,5	K562	blood:
9	chr6:27155262..27157566-chr6:27266020..27269001,2	K562	blood:
10	chr6:27114939..27117742-chr6:27153749..27157823,5	K562	blood:
11	chr6:27154833..27157823-chr6:27782934..27785900,2	K562	blood:
12	chr6:27150639..27152459-chr6:27154596..27157395,2	MCF-7	breast:
13	chr6:27154842..27156986-chr6:27301919..27304257,2	K562	blood:
14	chr6:27155528..27159493-chr6:27776465..27779576,3	K562	blood:
15	chr6:27154773..27157322-chr6:27634142..27636330,2	MCF-7	breast:
16	chr6:27155324..27157508-chr6:27634451..27636223,2	K562	blood:
17	chr6:27130956..27132580-chr6:27154818..27157126,2	K562	blood:
18	chr6:27130515..27132785-chr6:27154818..27157852,3	K562	blood:
19	chr6:27155275..27158320-chr6:27568064..27571527,3	K562	blood:
20	chr6:27156417..27159630-chr6:27160529..27165919,7	K562	blood:
21	chr6:27145758..27149060-chr6:27154386..27156904,3	MCF-7	breast:
22	chr6:27154579..27158488-chr6:27757538..27761648,4	MCF-7	breast:
23	chr6:27156028..27157789-chr6:27774192..27775722,2	K562	blood:
24	chr6:27133928..27135511-chr6:27156341..27158260,2	K562	blood:
25	chr6:27156279..27157260-chr6:27759304..27760417,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000233224	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000185130	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000217862	Chromatin interaction
ENSG00000203813	Chromatin interaction
ENSG00000196331	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases
2	esv3356749	chr6:27155446-27163661	Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27155000-27157000	Active TSS	Right Atrium	heart
2	chr6:27155200-27157000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:27155400-27157000	Active TSS	H9 Cell Line	embryonic stem cell
4	chr6:27155400-27157000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:27155400-27157000	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr6:27155400-27157000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:27155400-27157000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:27155400-27157000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:27155400-27157000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:27155400-27157000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:27155400-27157000	Active TSS	Fetal Kidney	kidney
12	chr6:27155400-27157000	Active TSS	K562	blood
13	chr6:27155400-27157200	Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr6:27155600-27157000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:27155600-27157000	Active TSS	HUES64 Cell Line	embryonic stem cell
16	chr6:27155600-27157000	Active TSS	NH-A	brain
17	chr6:27155600-27157200	Flanking Active TSS	Dnd41	blood
18	chr6:27155800-27157000	Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr6:27155800-27157000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:27156000-27157000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:27156000-27157000	Active TSS	Brain Hippocampus Middle	brain
22	chr6:27156200-27157000	Active TSS	Rectal Mucosa Donor 29	rectum
23	chr6:27156400-27157000	Active TSS	Primary T cells from cord blood	blood
24	chr6:27156400-27157000	Active TSS	Hela-S3	cervix
25	chr6:27156600-27157000	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr6:27156800-27157000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
27	chr6:27156800-27157000	Enhancers	Primary B cells from cord blood	blood
28	chr6:27156800-27157000	Enhancers	Primary T cells fromperipheralblood	blood
29	chr6:27156800-27157000	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr6:27156800-27157000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
31	chr6:27156800-27157000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
32	chr6:27156800-27157000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
33	chr6:27156800-27157000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
34	chr6:27156800-27157000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr6:27156800-27157000	Enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr6:27156800-27157000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr6:27156800-27157000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr6:27156800-27157000	Enhancers	Muscle Satellite Cultured Cells	--
39	chr6:27156800-27157000	Flanking Active TSS	Liver	Liver
40	chr6:27156800-27157000	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr6:27156800-27157000	Enhancers	Fetal Muscle Leg	muscle
42	chr6:27156800-27157000	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr6:27156800-27157000	Flanking Active TSS	Thymus	Thymus
44	chr6:27156800-27157000	Active TSS	Monocytes-CD14+_RO01746	blood
45	chr6:27156800-27157200	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr6:27156800-27157200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
47	chr6:27156800-27157200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr6:27156800-27157200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr6:27156800-27157200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
50	chr6:27156800-27157200	Enhancers	Primary T helper cells fromperipheralblood	blood

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