Variant report

Variant	rs555338879
Chromosome Location	chr7:66601625-66601626
allele	-/GT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758118	chr7:66401430-66859253	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2759535	chr7:66401430-66859253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv888330	chr7:66502171-66877880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
4	nsv831019	chr7:66516808-66720485	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	9 gene(s)	inside rSNPs	diseases
5	nsv966838	chr7:66548076-66617503	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
6	esv1802655	chr7:66576034-66634666	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
7	esv1816643	chr7:66576034-66634666	Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
8	esv1840497	chr7:66576034-66634666	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
9	esv1851064	chr7:66576034-66634666	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
10	esv1850306	chr7:66601324-66632583	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
11	esv1832033	chr7:66601324-66637001	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
12	esv1649334	chr7:66601624-66601626	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66533800-66623200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr7:66545600-66616600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr7:66547800-66602800	Weak transcription	Fetal Muscle Leg	muscle
4	chr7:66550000-66624000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr7:66566400-66605600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:66576600-66616600	Weak transcription	Fetal Stomach	stomach
7	chr7:66584200-66606600	Weak transcription	HSMMtube	muscle
8	chr7:66584400-66624400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr7:66585000-66622400	Weak transcription	HSMM	muscle
10	chr7:66585000-66623600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr7:66585200-66627200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr7:66589000-66605000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:66591400-66620000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr7:66591600-66626400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:66594000-66622000	Weak transcription	Pancreas	Pancrea
16	chr7:66594200-66623800	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr7:66594600-66604600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr7:66594600-66604800	Weak transcription	Small Intestine	intestine
19	chr7:66594600-66609200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr7:66594600-66614800	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr7:66594600-66615800	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr7:66594600-66617800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr7:66594600-66620200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr7:66594600-66621800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr7:66594800-66623000	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr7:66594800-66626800	Weak transcription	Dnd41	blood
27	chr7:66595000-66602800	Weak transcription	Primary T cells from cord blood	blood
28	chr7:66595000-66604200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr7:66595000-66613600	Weak transcription	K562	blood
30	chr7:66595000-66618800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr7:66595000-66627400	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr7:66595200-66616400	Weak transcription	GM12878-XiMat	blood
33	chr7:66595400-66604400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr7:66595400-66620400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr7:66595600-66604400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr7:66595600-66616600	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr7:66595800-66607800	Weak transcription	Ovary	ovary
38	chr7:66596000-66602600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr7:66596000-66611800	Weak transcription	Primary B cells from peripheral blood	blood
40	chr7:66596000-66618800	Weak transcription	Fetal Intestine Large	intestine
41	chr7:66596000-66619200	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr7:66596000-66620200	Weak transcription	Primary B cells from cord blood	blood
43	chr7:66596000-66620400	Weak transcription	Adipose Nuclei	Adipose
44	chr7:66597400-66605000	Weak transcription	Right Ventricle	heart
45	chr7:66598600-66616400	Weak transcription	Fetal Intestine Small	intestine
46	chr7:66600000-66603400	Enhancers	NHEK	skin
47	chr7:66600200-66603400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr7:66600400-66623400	Weak transcription	Brain Hippocampus Middle	brain
49	chr7:66600600-66605400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr7:66600800-66602200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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