Variant report

Variant	rs555353605
Chromosome Location	chr4:187614658-187614659
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:187613163..187617339-chr4:187617909..187621339,4	K562	blood:
2	chr4:187607227..187608946-chr4:187613643..187615297,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025088	chr4:187407683-187674585	Genic enhancers Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1025244	chr4:187419770-188284813	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1034212	chr4:187437895-188030805	Weak transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv537438	chr4:187437895-188030805	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv532745	chr4:187471692-188205443	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv1022262	chr4:187475862-187848284	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv1024705	chr4:187534005-187849091	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	nsv1026970	chr4:187537418-187913351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv596440	chr4:187538133-187848075	Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	esv3498359	chr4:187613358-187615956	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3468103	chr4:187614390-187614944	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3498358	chr4:187614409-187614928	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3468104	chr4:187614433-187614916	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3498357	chr4:187614458-187614894	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3468102	chr4:187614503-187614849	Genic enhancers Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3498360	chr4:187614513-187614851	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3372996	chr4:187614514-187614954	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3468105	chr4:187614517-187614849	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv3498361	chr4:187614517-187614849	Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:187600200-187617000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:187604600-187618000	Weak transcription	Fetal Stomach	stomach
3	chr4:187604600-187626800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:187607400-187618200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr4:187608000-187619400	Weak transcription	Small Intestine	intestine
6	chr4:187608000-187632400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr4:187608200-187622200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr4:187610200-187621200	Weak transcription	Brain Hippocampus Middle	brain
9	chr4:187610800-187615000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:187610800-187620600	Weak transcription	Fetal Kidney	kidney
11	chr4:187611000-187614800	Strong transcription	Fetal Intestine Small	intestine
12	chr4:187611000-187618200	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr4:187611400-187617200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:187611400-187617400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr4:187611600-187620600	Weak transcription	Fetal Lung	lung
16	chr4:187611800-187615000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr4:187611800-187616600	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr4:187612000-187620800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr4:187612400-187616200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr4:187612600-187615000	Strong transcription	Fetal Intestine Large	intestine
21	chr4:187612800-187616400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr4:187613000-187617400	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr4:187613800-187615200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr4:187613800-187615200	Flanking Active TSS	A549	lung
25	chr4:187613800-187615400	Enhancers	Pancreas	Pancrea
26	chr4:187614000-187615200	Enhancers	Adipose Nuclei	Adipose
27	chr4:187614000-187615400	Enhancers	Right Ventricle	heart
28	chr4:187614000-187615400	Enhancers	Stomach Mucosa	stomach
29	chr4:187614000-187615600	Enhancers	Colon Smooth Muscle	Colon
30	chr4:187614000-187615600	Enhancers	NHLF	lung
31	chr4:187614000-187615800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr4:187614000-187620000	Enhancers	Left Ventricle	heart
33	chr4:187614200-187614800	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr4:187614200-187615000	Enhancers	Hela-S3	cervix
35	chr4:187614200-187615200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr4:187614400-187614800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr4:187614400-187614800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr4:187614400-187614800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr4:187614400-187614800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr4:187614400-187614800	Enhancers	Aorta	Aorta
41	chr4:187614400-187614800	Enhancers	Colonic Mucosa	Colon
42	chr4:187614400-187614800	Enhancers	Esophagus	oesophagus
43	chr4:187614400-187614800	Genic enhancers	Ovary	ovary
44	chr4:187614400-187614800	Enhancers	Rectal Smooth Muscle	rectum
45	chr4:187614400-187614800	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr4:187614400-187614800	Transcr. at gene 5' and 3'	HMEC	breast
47	chr4:187614400-187614800	Flanking Active TSS	K562	blood
48	chr4:187614400-187615000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr4:187614400-187615000	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr4:187614400-187615000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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