Variant report
| Variant | rs555356075 |
|---|---|
| Chromosome Location | chr8:114384882-114384883 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:17)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:17 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | SMC3 | chr8:114384613-114384918 | Hela-S3 | cervix: | n/a | chr8:114384756-114384770 |
| 2 | CTCF | chr8:114384629-114384893 | HUVEC | blood vessel: | n/a | chr8:114384756-114384777 chr8:114384754-114384772 |
| 3 | CTCF | chr8:114384509-114385034 | MCF-7 | breast: | n/a | chr8:114384756-114384777 chr8:114384754-114384772 |
| 4 | RAD21 | chr8:114384562-114384944 | ECC-1 | luminal epithelium: | n/a | chr8:114384755-114384774 |
| 5 | CTCF | chr8:114384645-114384884 | MCF-7 | breast: | n/a | chr8:114384756-114384777 chr8:114384754-114384772 |
| 6 | CTCF | chr8:114384552-114384937 | GM12878 | blood: | n/a | chr8:114384756-114384777 chr8:114384754-114384772 |
| 7 | RAD21 | chr8:114384631-114384929 | SK-N-SH_RA | brain: | n/a | chr8:114384755-114384774 |
| 8 | ZNF143 | chr8:114384619-114384911 | GM12878 | blood: | n/a | n/a |
| 9 | CTCF | chr8:114384533-114384986 | SK-N-SH | brain: | n/a | chr8:114384756-114384777 chr8:114384754-114384772 |
| 10 | SMC3 | chr8:114384586-114384915 | GM12878 | blood: | n/a | chr8:114384756-114384770 |
| 11 | RAD21 | chr8:114384592-114384942 | Hela-S3 | cervix: | n/a | chr8:114384755-114384774 |
| 12 | CTCF | chr8:114384521-114384934 | MCF-7 | breast: | n/a | chr8:114384756-114384777 chr8:114384754-114384772 |
| 13 | RAD21 | chr8:114384477-114385019 | MCF-7 | breast: | n/a | chr8:114384755-114384774 |
| 14 | RAD21 | chr8:114384644-114384905 | SK-N-SH_RA | brain: | n/a | chr8:114384755-114384774 |
| 15 | RAD21 | chr8:114384478-114384986 | SK-N-SH | brain: | n/a | chr8:114384755-114384774 |
| 16 | RAD21 | chr8:114384605-114384926 | H1-hESC | embryonic stem cell: | n/a | chr8:114384755-114384774 |
| 17 | RAD21 | chr8:114384589-114384972 | H1-hESC | embryonic stem cell: | n/a | chr8:114384755-114384774 |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:114384438..114385053-chr8:114992865..114993457,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000227514 | TF binding region |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2754581 | chr8:114029421-114419106 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv817379 | chr8:114338391-115011632 | Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | esv2754463 | chr8:114353649-114501547 | Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv1019362 | chr8:114377031-114419106 | Active TSS Enhancers Weak transcription | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv1031488 | chr8:114382671-114419106 | Weak transcription Enhancers Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
