Variant report

Variant	rs555375506
Chromosome Location	chr4:143438099-143438100
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:143437978..143440231-chr4:143767041..143768729,2	MCF-7	breast:
2	chr4:143391320..143397090-chr4:143436268..143441588,7	MCF-7	breast:
3	chr4:143427468..143430250-chr4:143437553..143439341,2	MCF-7	breast:
4	chr4:143436540..143438888-chr4:143456433..143458379,2	MCF-7	breast:
5	chr4:143431692..143434414-chr4:143436305..143438204,2	MCF-7	breast:
6	chr4:143389462..143399452-chr4:143428707..143442488,28	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv461660	chr4:143437219-143538179	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv595605	chr4:143437219-143538179	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143428800-143453000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:143434000-143440600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:143436600-143438800	Enhancers	HMEC	breast
4	chr4:143436600-143440000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:143436600-143440000	Enhancers	Dnd41	blood
6	chr4:143437200-143438800	Enhancers	NHEK	skin
7	chr4:143437200-143439000	Enhancers	Fetal Heart	heart
8	chr4:143437400-143438200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:143437400-143438200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr4:143437400-143438200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:143437400-143438600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr4:143437600-143438200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:143437600-143438200	Enhancers	Fetal Intestine Small	intestine
14	chr4:143437600-143438200	Enhancers	Left Ventricle	heart
15	chr4:143437600-143438600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr4:143437600-143438600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr4:143437600-143438600	Enhancers	Fetal Intestine Large	intestine
18	chr4:143437600-143438600	Enhancers	A549	lung
19	chr4:143437600-143438600	Enhancers	HSMM	muscle
20	chr4:143437600-143438600	Enhancers	NH-A	brain
21	chr4:143437600-143438800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr4:143437800-143438200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr4:143437800-143438200	Enhancers	Right Atrium	heart
24	chr4:143438000-143438200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links