Variant report

Variant	rs555404866
Chromosome Location	chr14:79164039-79164040
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr14:79163722-79164105	K562	blood:	n/a	chr14:79163887-79163908
2	RAD21	chr14:79163647-79164087	HepG2	liver:	n/a	chr14:79163900-79163907
3	ZNF143	chr14:79163766-79164080	GM12878	blood:	n/a	n/a
4	SMC3	chr14:79163721-79164068	Hela-S3	cervix:	n/a	n/a
5	RAD21	chr14:79163724-79164083	HepG2	liver:	n/a	chr14:79163900-79163907
6	RAD21	chr14:79163659-79164066	A549	lung:	n/a	chr14:79163900-79163907
7	SMC3	chr14:79163744-79164228	SK-N-SH	brain:	n/a	n/a
8	RAD21	chr14:79163672-79164155	MCF-7	breast:	n/a	chr14:79163900-79163907
9	RAD21	chr14:79163666-79164055	H1-hESC	embryonic stem cell:	n/a	chr14:79163900-79163907
10	SMC3	chr14:79163763-79164047	GM12878	blood:	n/a	n/a
11	RAD21	chr14:79163691-79164082	Hela-S3	cervix:	n/a	chr14:79163900-79163907
12	CTCF	chr14:79163699-79164077	HepG2	liver:	n/a	chr14:79163887-79163908
13	CTCF	chr14:79163900-79164050	HFF-Myc	foreskin:	n/a	n/a
14	RAD21	chr14:79163712-79164101	HCT-116	colon:	n/a	chr14:79163900-79163907
15	RAD21	chr14:79163515-79164297	SK-N-SH	brain:	n/a	chr14:79163900-79163907
16	CTCF	chr14:79163774-79164044	Medullo	brain:	n/a	chr14:79163887-79163908
17	CTCF	chr14:79163592-79164270	SK-N-SH	brain:	n/a	chr14:79163887-79163908
18	CTCF	chr14:79163762-79164040	HUVEC	blood vessel:	n/a	chr14:79163887-79163908
19	CTCF	chr14:79163731-79164049	MCF-7	breast:	n/a	chr14:79163887-79163908
20	CTCF	chr14:79163713-79164144	MCF-7	breast:	n/a	chr14:79163887-79163908
21	TCF7L2	chr14:79163653-79164060	HEK293	kidney:	n/a	chr14:79163805-79163819 chr14:79163806-79163816 chr14:79163774-79163783 chr14:79163808-79163817 chr14:79163807-79163816 chr14:79163804-79163818 chr14:79163804-79163820 chr14:79163804-79163820
22	RAD21	chr14:79163713-79164110	IMR90	lung:	n/a	chr14:79163900-79163907
23	RAD21	chr14:79163704-79164166	MCF-7	breast:	n/a	chr14:79163900-79163907
24	RAD21	chr14:79163703-79164082	H1-hESC	embryonic stem cell:	n/a	chr14:79163900-79163907
25	CTCF	chr14:79163746-79164087	H1-hESC	embryonic stem cell:	n/a	chr14:79163887-79163908
26	E2F4	chr14:79163837-79164075	MCF10A-Er-Src	breast:	n/a	n/a
27	RAD21	chr14:79163709-79164132	HCT-116	colon:	n/a	chr14:79163900-79163907
28	CTCF	chr14:79163722-79164119	IMR90	lung:	n/a	chr14:79163887-79163908
29	CTCF	chr14:79163714-79164051	A549	lung:	n/a	chr14:79163887-79163908
30	CTCF	chr14:79163534-79164313	A549	lung:	n/a	chr14:79163887-79163908
31	RAD21	chr14:79163711-79164039	A549	lung:	n/a	chr14:79163900-79163907
32	CTCF	chr14:79163900-79164050	GM12873	blood:	n/a	n/a
33	CTCF	chr14:79163708-79164100	GM12878	blood:	n/a	chr14:79163887-79163908

No.	Distal block	Cell Line	Cell type
1	chr14:78488036..78488630-chr14:79163630..79164376,2	K562	blood:
2	chr14:78630320..78630924-chr14:79163432..79164245,2	MCF-7	breast:
3	chr14:79064098..79065061-chr14:79163439..79164257,3	MCF-7	breast:
4	chr14:78914156..78915026-chr14:79163475..79164182,2	MCF-7	breast:

Variant related genes	Relation type
NRXN3	TF binding region

Extended variants
information (count: 23 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv565236	chr14:79156377-79165596	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv565237	chr14:79157040-79165608	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
5	esv3530261	chr14:79159000-79165796	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
6	esv3530263	chr14:79159029-79165792	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
7	esv3530262	chr14:79159066-79165745	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
8	esv3530264	chr14:79159066-79165745	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
9	esv13449	chr14:79159520-79165627	Weak transcription Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
10	nsv565238	chr14:79160430-79164498	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
11	nsv565239	chr14:79160430-79165089	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
12	nsv565240	chr14:79160430-79165596	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
13	nsv565241	chr14:79160430-79165608	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
14	nsv565242	chr14:79160430-79166221	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
15	esv2421742	chr14:79160946-79165608	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
16	nsv442348	chr14:79161185-79165607	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
17	nsv565243	chr14:79161542-79165608	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
18	nsv517018	chr14:79161622-79165217	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
19	nsv565244	chr14:79161622-79165608	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
20	nsv524797	chr14:79161622-79167881	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
21	nsv514753	chr14:79161727-79165327	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
22	nsv565245	chr14:79162573-79165217	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
23	nsv565246	chr14:79162967-79165608	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79164000-79164800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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