Variant report

Variant	rs555418100
Chromosome Location	chr5:107354965-107354966
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3378142	chr5:107354953-107358201	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107339200-107357400	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr5:107339200-107361200	Weak transcription	Fetal Heart	heart
3	chr5:107339200-107364200	Weak transcription	Left Ventricle	heart
4	chr5:107339600-107364200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:107339600-107373800	Weak transcription	Primary T cells from cord blood	blood
6	chr5:107342600-107355600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:107344000-107364200	Weak transcription	Psoas Muscle	Psoas
8	chr5:107344400-107363800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:107350800-107356200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:107351400-107355600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr5:107352800-107358200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr5:107352800-107364200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:107353200-107357200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr5:107353400-107357600	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr5:107354000-107355000	Strong transcription	Primary B cells from cord blood	blood
16	chr5:107354200-107357200	Weak transcription	Primary B cells from peripheral blood	blood
17	chr5:107354600-107355400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links