Variant report

Variant	rs555429990
Chromosome Location	chr6:28762890-28762891
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28762168..28764957-chr6:28971752..28974125,2	K562	blood:
2	chr6:28691994..28695396-chr6:28761030..28763739,3	K562	blood:
3	chr6:28761882..28764605-chr6:28861705..28864953,3	K562	blood:

Variant related genes	Relation type
ENSG00000224157	Chromatin interaction
ENSG00000197935	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883517	chr6:28751727-28802149	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv3384463	chr6:28759027-28776259	Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2621756	chr6:28762692-28779791	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28759600-28763600	Weak transcription	Hela-S3	cervix
2	chr6:28761600-28763000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
3	chr6:28761600-28763000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
4	chr6:28761600-28763800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
5	chr6:28761600-28764600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
6	chr6:28761800-28763000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:28761800-28763000	Active TSS	A549	lung
8	chr6:28761800-28763600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
9	chr6:28761800-28763600	Flanking Active TSS	K562	blood
10	chr6:28761800-28764200	Flanking Active TSS	HepG2	liver
11	chr6:28762000-28763000	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:28762400-28763200	Flanking Bivalent TSS/Enh	GM12878-XiMat	blood
13	chr6:28762600-28763000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
14	chr6:28762600-28763000	Bivalent Enhancer	Fetal Kidney	kidney
15	chr6:28762600-28763000	Bivalent Enhancer	Fetal Lung	lung
16	chr6:28762600-28763000	Enhancers	Placenta	Placenta
17	chr6:28762800-28763000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:28762800-28763000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
19	chr6:28762800-28763000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:28762800-28763000	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:28762800-28763000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:28762800-28763000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:28762800-28763000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:28762800-28763000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:28762800-28763000	Bivalent Enhancer	Stomach Smooth Muscle	stomach
26	chr6:28762800-28763000	Bivalent/Poised TSS	NHEK	skin
27	chr6:28762800-28763200	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr6:28762800-28763200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
29	chr6:28762800-28763400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:28762800-28763400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr6:28762800-28763400	Enhancers	HMEC	breast
32	chr6:28762800-28763400	Bivalent Enhancer	Osteobl	bone
33	chr6:28762800-28763600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
34	chr6:28762800-28763800	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin

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