Variant report
| Variant | rs555447127 |
|---|---|
| Chromosome Location | chr3:22423038-22423039 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:15)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:15 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr3:22422972-22424003 | GM12892 | blood: | n/a | n/a |
| 2 | TAF1 | chr3:22423026-22423436 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 3 | POLR2A | chr3:22423031-22423275 | GM12878 | blood: | n/a | n/a |
| 4 | POLR2A | chr3:22422962-22423417 | MCF-7 | breast: | n/a | n/a |
| 5 | POLR2A | chr3:22422960-22423487 | GM12891 | blood: | n/a | n/a |
| 6 | POLR2A | chr3:22422957-22423437 | MCF-7 | breast: | n/a | n/a |
| 7 | POLR2A | chr3:22422987-22423385 | HUVEC | blood vessel: | n/a | n/a |
| 8 | POLR2A | chr3:22422947-22424489 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 9 | POLR2A | chr3:22422998-22423773 | GM12891 | blood: | n/a | n/a |
| 10 | POLR2A | chr3:22423036-22423487 | ProgFib | skin: | n/a | n/a |
| 11 | POLR2A | chr3:22422961-22423444 | MCF-7 | breast: | n/a | n/a |
| 12 | POLR2A | chr3:22422997-22423346 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 13 | POLR2A | chr3:22422988-22423349 | Gliobla | brain: | n/a | n/a |
| 14 | POLR2A | chr3:22422993-22423397 | K562 | blood: | n/a | n/a |
| 15 | POLR2A | chr3:22423024-22423503 | Hela-S3 | cervix: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| HMGB1P5 | TF binding region |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv432404 | chr3:22000296-22433396 | Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1003211 | chr3:22244883-22584229 | Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv536520 | chr3:22244883-22584229 | Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv428082 | chr3:22397625-22539817 | Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv834634 | chr3:22420053-22574021 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv965148 | chr3:22421613-22424357 | Enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
